BCCDC-PHL / tbprofiler-nf

Nextflow Wrapper for TBProfiler
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snpit occasionally reports H37Rv-like samples as M. canetti or M. pinnipedii #22

Closed dfornika closed 5 months ago

dfornika commented 5 months ago

We've seen some examples of samples that have an H37Rv-like genotype, but get reported as M. canetti or M. pinnipedii, with a Percentage of ~0.1.

We should handle these cases where the Percentage is very low and correct the Species field.