BCCDC-PHL / tbprofiler-nf

Nextflow Wrapper for TBProfiler
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Add snpit for subspecies calling #8

Closed dfornika closed 1 year ago

dfornika commented 1 year ago

We'd like to incorporate subspecies calling into our analysis, using philipfowler/snpit

In order to do this, we'll need to collect the whole genome .vcf files from TBProfiler and feed those into snpit. We had previously only been collecting the target-specific .vcf files from TBProfiler.