update Python3, 64-bit - Githubissues

prjemian commented 4 years ago

/APSshare/anaconda3/x86_64

prjemian commented 4 years ago

previous effort to update failed on August 22

prjemian commented 4 years ago

need to rehearse this process in separate directory

prjemian commented 4 years ago

Here's the notes from August 23

notes

``` 2019-08-23: trouble! NOTE: /APSshare/anaconda3/x86_64 is likely broken right now 2019-08-23: maintenance on Python3, 64-bit installation cd /APSshare/anaconda3 source ./x86_64/bin/activate conda env export | tee 20190823_x86_64_export-before.txt conda update conda Collecting package metadata: done Solving environment: | The environment is inconsistent, please check the package plan carefully The following packages are causing the inconsistency: - conda-forge/linux-64::openssl==1.1.1b=h14c3975_1 - defaults/linux-64::libgcc-ng==8.2.0=hdf63c60_1 - defaults/linux-64::bzip2==1.0.6=h14c3975_5 - defaults/linux-64::expat==2.2.6=he6710b0_0 - defaults/linux-64::gmp==6.1.2=h6c8ec71_1 - defaults/linux-64::fribidi==1.0.5=h7b6447c_0 - defaults/linux-64::icu==58.2=h9c2bf20_1 - defaults/linux-64::jbig==2.1=hdba287a_0 - defaults/linux-64::jpeg==9b=h024ee3a_2 - defaults/linux-64::libffi==3.2.1=hd88cf55_4 - defaults/linux-64::graphite2==1.3.13=h23475e2_0 - defaults/linux-64::libgcc==7.2.0=h69d50b8_2 - defaults/linux-64::libsodium==1.0.16=h1bed415_0 - defaults/linux-64::lzo==2.10=h49e0be7_2 - defaults/linux-64::libtool==2.4.6=h7b6447c_5 - defaults/linux-64::libuuid==1.0.3=h1bed415_2 - defaults/linux-64::libxcb==1.13=h1bed415_1 - conda-forge/linux-64::certifi==2019.3.9=py36_0 - defaults/linux-64::ncurses==6.1=he6710b0_1 - defaults/linux-64::patchelf==0.9=he6710b0_3 - defaults/linux-64::pcre==8.43=he6710b0_0 - defaults/linux-64::pixman==0.38.0=h7b6447c_0 - defaults/linux-64::redis==5.0.3=h7b6447c_0 - defaults/linux-64::xz==5.2.4=h14c3975_4 - defaults/linux-64::yaml==0.1.7=had09818_2 - defaults/linux-64::zlib==1.2.11=h7b6447c_3 - defaults/linux-64::glib==2.56.2=hd408876_0 - defaults/linux-64::hdf5==1.10.4=hb1b8bf9_0 - defaults/linux-64::snappy==1.1.7=hbae5bb6_3 - defaults/linux-64::blosc==1.15.0=hd408876_0 - defaults/linux-64::libpng==1.6.36=hbc83047_0 - defaults/linux-64::libssh2==1.8.0=h1ba5d50_4 - defaults/linux-64::krb5==1.16.1=h173b8e3_7 - defaults/linux-64::pandoc==2.2.3.2=0 - defaults/linux-64::readline==7.0=h7b6447c_5 - defaults/linux-64::libxml2==2.9.9=he19cac6_0 - defaults/linux-64::tk==8.6.8=hbc83047_0 - defaults/linux-64::mpfr==4.0.1=hdf1c602_3 - defaults/linux-64::zeromq==4.3.1=he6710b0_3 - defaults/linux-64::freetype==2.9.1=h8a8886c_1 - defaults/linux-64::gstreamer==1.14.0=hb453b48_1 - defaults/linux-64::libedit==3.1.20181209=hc058e9b_0 - defaults/linux-64::zstd==1.3.7=h0b5b093_0 - defaults/linux-64::dbus==1.13.6=h746ee38_0 - defaults/linux-64::libtiff==4.0.10=h2733197_2 - defaults/linux-64::libxslt==1.1.33=h7d1a2b0_0 - defaults/linux-64::unixodbc==2.3.7=h14c3975_0 - defaults/linux-64::_license==1.1=py36_1 - defaults/linux-64::alabaster==0.7.12=py36_0 - defaults/linux-64::anaconda-clean==1.1.0=py36_1 - defaults/linux-64::mpc==1.1.0=h10f8cd9_1 - defaults/linux-64::asn1crypto==0.24.0=py36_0 - defaults/linux-64::sqlite==3.27.2=h7b6447c_0 - defaults/linux-64::libcurl==7.64.0=h20c2e04_2 - defaults/linux-64::backcall==0.1.0=py36_0 - defaults/linux-64::backports==1.0=py36_1 - defaults/linux-64::fontconfig==2.13.0=h9420a91_0 - defaults/linux-64::python==3.6.8=h0371630_0 - defaults/linux-64::boto==2.49.0=py36_0 - defaults/linux-64::argcomplete==1.9.5=py36_0 - defaults/linux-64::chardet==3.0.4=py36_1 - defaults/linux-64::click==7.0=py36_0 - defaults/linux-64::atomicwrites==1.3.0=py36_1 - defaults/linux-64::colorama==0.4.1=py36_0 - defaults/linux-64::attrs==19.1.0=py36_1 - defaults/linux-64::cairo==1.14.12=h8948797_3 - conda-forge/noarch::icalendar==4.0.3=py_0 - defaults/linux-64::gst-plugins-base==1.14.0=hbbd80ab_1 - defaults/linux-64::cloudpickle==0.8.0=py36_0 - defaults/linux-64::contextlib2==0.5.5=py36h6c84a62_0 - defaults/linux-64::curl==7.64.0=hbc83047_2 - defaults/linux-64::dask-core==1.1.4=py36_1 - defaults/linux-64::decorator==4.4.0=py36_1 - defaults/linux-64::defusedxml==0.5.0=py36_1 - defaults/linux-64::filelock==3.0.10=py36_0 - defaults/linux-64::glob2==0.6=py36_1 - defaults/linux-64::dill==0.2.9=py36_0 - defaults/linux-64::heapdict==1.0.0=py36_2 - defaults/linux-64::idna==2.8=py36_0 - defaults/linux-64::imagesize==1.1.0=py36_0 - defaults/linux-64::incremental==17.5.0=py36_0 - defaults/linux-64::itsdangerous==1.1.0=py36_0 - defaults/linux-64::entrypoints==0.3=py36_0 - defaults/linux-64::jdcal==1.4=py36_0 - defaults/linux-64::jeepney==0.4=py36_0 - defaults/linux-64::gmpy2==2.0.8=py36h10f8cd9_2 - defaults/linux-64::locket==0.2.0=py36h787c0ad_1 - defaults/linux-64::appdirs==1.4.3=py36h28b3542_0 - defaults/linux-64::bitarray==0.8.3=py36h14c3975_0 - defaults/linux-64::mccabe==0.6.1=py36_1 - defaults/linux-64::constantly==15.1.0=py36h28b3542_0 - defaults/linux-64::mpmath==1.1.0=py36_0 - defaults/linux-64::olefile==0.46=py36_0 - defaults/linux-64::pandocfilters==1.4.2=py36_1 - defaults/linux-64::lxml==4.3.2=py36hefd8a0e_0 - defaults/linux-64::pep8==1.7.1=py36_0 - defaults/linux-64::pickleshare==0.7.5=py36_0 - defaults/linux-64::more-itertools==6.0.0=py36_0 - defaults/linux-64::parso==0.3.4=py36_0 - defaults/linux-64::ply==3.11=py36_0 - defaults/linux-64::pkginfo==1.5.0.1=py36_0 - defaults/linux-64::ptyprocess==0.6.0=py36_0 - defaults/linux-64::pluggy==0.9.0=py36_0 - defaults/linux-64::psutil==5.6.1=py36h7b6447c_0 - defaults/linux-64::py==1.8.0=py36_0 - defaults/linux-64::pycparser==2.19=py36_0 - defaults/linux-64::h5py==2.9.0=py36h7918eee_0 - defaults/noarch::pyasn1==0.4.5=py_0 - defaults/linux-64::pycodestyle==2.5.0=py36_0 - defaults/linux-64::pysocks==1.6.8=py36_0 - defaults/linux-64::pyflakes==2.1.1=py36_0 - defaults/linux-64::pyparsing==2.3.1=py36_0 - defaults/linux-64::pytz==2018.9=py36_0 - defaults/linux-64::qt==5.9.7=h5867ecd_1 - defaults/linux-64::pyyaml==5.1=py36h7b6447c_0 - defaults/linux-64::pyzmq==18.0.0=py36he6710b0_0 - defaults/linux-64::qtpy==1.7.0=py36_1 - defaults/linux-64::send2trash==1.5.0=py36_0 - defaults/linux-64::simplegeneric==0.8.1=py36_2 - defaults/linux-64::sip==4.19.8=py36hf484d3e_0 - defaults/linux-64::six==1.12.0=py36_0 - defaults/linux-64::sphinxcontrib==1.0=py36_1 - defaults/noarch::redis-py==3.2.1=py_0 - defaults/linux-64::testpath==0.4.2=py36_0 - defaults/linux-64::toolz==0.9.0=py36_0 - defaults/linux-64::rope==0.12.0=py36_0 - defaults/linux-64::typing==3.6.4=py36_0 - defaults/linux-64::soupsieve==1.8=py36_0 - defaults/linux-64::tblib==1.3.2=py36h34cf8b6_0 - defaults/linux-64::webencodings==0.5.1=py36_1 - defaults/linux-64::werkzeug==0.14.1=py36_0 - defaults/linux-64::wurlitzer==1.0.2=py36_0 - defaults/linux-64::xlrd==1.2.0=py36_0 - defaults/linux-64::docutils==0.14=py36hb0f60f5_0 - defaults/linux-64::tqdm==4.31.1=py36_1 - defaults/linux-64::fastcache==1.0.2=py36h14c3975_2 - defaults/linux-64::wrapt==1.11.1=py36h7b6447c_0 - defaults/linux-64::zope==1.0=py36_1 - defaults/linux-64::xlsxwriter==1.1.5=py36_0 - defaults/linux-64::automat==0.7.0=py36_0 - defaults/linux-64::babel==2.6.0=py36_0 - defaults/linux-64::xlwt==1.3.0=py36h7b00a1f_0 - defaults/linux-64::backports.os==0.1.1=py36_0 - defaults/linux-64::zipp==0.3.3=py36_1 - defaults/linux-64::chest==0.2.3=py36_1 - defaults/linux-64::harfbuzz==1.8.8=hffaf4a1_0 - conda-forge/linux-64::conda==4.6.14=py36_0 - defaults/linux-64::liblief==0.9.0=h7725739_2 - defaults/linux-64::greenlet==0.4.15=py36h7b6447c_0 - defaults/linux-64::et_xmlfile==1.0.1=py36hd6bccc3_0 - defaults/linux-64::configobj==5.0.6=py36_1 - defaults/linux-64::beautifulsoup4==4.7.1=py36_1 - defaults/linux-64::html5lib==1.0.1=py36_0 - defaults/linux-64::ipython_genutils==0.2.0=py36hb52b0d5_0 - defaults/linux-64::cffi==1.12.2=py36h2e261b9_1 - defaults/noarch::hyperlink==19.0.0=py_0 - defaults/linux-64::lazy-object-proxy==1.3.1=py36h14c3975_2 - defaults/linux-64::jedi==0.13.3=py36_0 - defaults/linux-64::nltk==3.4=py36_1 - defaults/linux-64::openpyxl==2.6.1=py36_1 - defaults/linux-64::packaging==19.0=py36_0 - defaults/linux-64::partd==0.3.10=py36_1 - defaults/linux-64::llvmlite==0.28.0=py36hd408876_0 - defaults/linux-64::pathlib2==2.3.3=py36_0 - defaults/linux-64::pexpect==4.6.0=py36_0 - defaults/linux-64::pillow==5.4.1=py36h34e0f95_0 - defaults/linux-64::pyasn1-modules==0.2.4=py36_0 - defaults/linux-64::pyhamcrest==1.9.0=py36_2 - defaults/linux-64::pyqt==5.9.2=py36h05f1152_2 - defaults/linux-64::qtawesome==0.5.7=py36_1 - defaults/linux-64::setuptools==40.8.0=py36_0 - defaults/linux-64::sockjs-tornado==1.0.6=py36_0 - defaults/linux-64::sympy==1.3=py36_0 - defaults/linux-64::markupsafe==1.1.1=py36h7b6447c_0 - defaults/linux-64::terminado==0.8.1=py36_1 - defaults/linux-64::zict==0.1.4=py36_0 - defaults/linux-64::astroid==2.2.5=py36_0 - defaults/linux-64::bcrypt==3.1.6=py36h7b6447c_0 - defaults/linux-64::clyent==1.2.2=py36_1 - defaults/linux-64::bleach==3.1.0=py36_0 - defaults/linux-64::pango==1.42.4=h049681c_0 - defaults/linux-64::distributed==1.26.0=py36_1 - defaults/linux-64::gevent==1.4.0=py36h7b6447c_0 - defaults/linux-64::jinja2==2.10=py36_0 - defaults/linux-64::isort==4.3.16=py36_0 - defaults/linux-64::lz4-c==1.8.1.2=h14c3975_0 - defaults/linux-64::jupyter_core==4.4.0=py36_0 - defaults/linux-64::mistune==0.8.4=py36h7b6447c_0 - defaults/linux-64::mkl-service==1.1.2=py36he904b0f_5 - defaults/linux-64::libglu==9.0.0=hf484d3e_1 - defaults/linux-64::libarchive==3.3.3=h5d8350f_5 - defaults/linux-64::networkx==2.2=py36_1 - defaults/linux-64::msgpack-python==0.6.1=py36hfd86e86_1 - defaults/linux-64::prometheus_client==0.6.0=py36_0 - defaults/linux-64::gettext==0.19.8.1=hd7bead4_3 - defaults/linux-64::pyodbc==4.0.26=py36he6710b0_0 - defaults/linux-64::snowballstemmer==1.2.1=py36h6febd40_0 - defaults/linux-64::kiwisolver==1.0.1=py36hf484d3e_0 - prjemian/noarch::pyresttable==2019.0321.0=py_0 - defaults/linux-64::sqlalchemy==1.3.1=py36h7b6447c_0 - defaults/linux-64::tornado==6.0.2=py36h7b6447c_0 - prjemian/noarch::spec2nexus==2020.0.0=pyh39e3cac_0 - defaults/linux-64::py-lief==0.9.0=py36h7725739_2 - defaults/linux-64::python-libarchive-c==2.8=py36_6 - defaults/linux-64::conda-build==3.17.8=py36_0 - defaults/linux-64::odo==0.5.1=py36_0 - defaults/linux-64::blaze==0.11.3=py36_0 - defaults/linux-64::anaconda==custom=py36hbbc8b67_0 - defaults/linux-64::pycosat==0.6.3=py36h14c3975_0 - defaults/linux-64::pycrypto==2.6.1=py36h14c3975_9 - defaults/linux-64::typed-ast==1.3.1=py36h7b6447c_0 - defaults/linux-64::unicodecsv==0.14.1=py36ha668878_0 - defaults/linux-64::wcwidth==0.1.7=py36hdf4376a_0 - defaults/linux-64::nose==1.3.7=py36_2 - defaults/linux-64::cycler==0.10.0=py36h93f1223_0 - defaults/linux-64::importlib_metadata==0.8=py36_0 - defaults/linux-64::pyrsistent==0.14.11=py36h7b6447c_0 - defaults/linux-64::python-dateutil==2.8.0=py36_0 - defaults/linux-64::singledispatch==3.4.0.3=py36h7a266c3_0 - defaults/linux-64::sortedcollections==1.1.2=py36_0 - defaults/linux-64::traitlets==4.3.2=py36h674d592_0 - defaults/linux-64::cryptography==2.6.1=py36h1ba5d50_0 - defaults/linux-64::cython==0.29.6=py36he6710b0_0 - defaults/linux-64::jsonschema==3.0.1=py36_0 - defaults/linux-64::pycurl==7.43.0.2=py36h1ba5d50_0 - defaults/linux-64::pytest==4.3.1=py36_0 - defaults/linux-64::wheel==0.33.1=py36_0 - defaults/linux-64::ruamel_yaml==0.15.46=py36h14c3975_0 - defaults/linux-64::nbformat==4.4.0=py36h31c9010_0 - defaults/linux-64::sortedcontainers==2.1.0=py36_0 - defaults/linux-64::pip==19.0.3=py36_0 - defaults/linux-64::prompt_toolkit==2.0.9=py36_0 - defaults/linux-64::pylint==2.3.1=py36_0 - defaults/linux-64::pyopenssl==19.0.0=py36_0 - defaults/linux-64::backports.shutil_get_terminal_size==1.0.0=py36_2 - defaults/linux-64::cytoolz==0.9.0.1=py36h14c3975_1 - defaults/linux-64::multipledispatch==0.6.0=py36_0 - defaults/linux-64::pytest-metadata==1.8.0=py36_0 - defaults/linux-64::pytest-openfiles==0.3.2=py36_0 - defaults/linux-64::secretstorage==3.1.1=py36_0 - defaults/linux-64::sphinxcontrib-websupport==1.1.0=py36_1 - defaults/linux-64::zope.interface==4.6.0=py36h7b6447c_0 - defaults/linux-64::wxpython==4.0.4=py36hc99224d_0 - defaults/linux-64::ipython==7.4.0=py36h39e3cac_0 - defaults/linux-64::path.py==11.5.0=py36_0 - defaults/linux-64::pygments==2.3.1=py36_0 - defaults/linux-64::keyring==18.0.0=py36_0 - defaults/linux-64::nbconvert==5.4.1=py36_3 - defaults/linux-64::pytest-html==1.20.0=py36_0 - defaults/linux-64::flask==1.0.2=py36_1 - defaults/linux-64::jupyter_client==5.2.4=py36_0 - defaults/linux-64::twisted==19.2.0=py36h7b6447c_0 - defaults/linux-64::notebook==5.7.8=py36_0 - defaults/linux-64::sphinx==1.8.5=py36_0 - defaults/linux-64::spyder-kernels==0.4.2=py36_0 - defaults/linux-64::pyjwt==1.7.1=py36_0 - defaults/linux-64::spyder==3.3.3=py36_0 - defaults/linux-64::anaconda-navigator==1.9.7=py36_0 - defaults/linux-64::nb_conda_kernels==2.2.0=py36_1 - defaults/linux-64::jupyterlab==0.35.4=py36hf63ae98_0 - defaults/linux-64::bokeh==1.0.4=py36_0 - defaults/linux-64::pytest-remotedata==0.3.1=py36_0 - defaults/linux-64::service_identity==18.1.0=py36h28b3542_0 - defaults/linux-64::imageio==2.5.0=py36_0 - defaults/linux-64::flask-cors==3.0.7=py36_0 - defaults/linux-64::matplotlib==3.0.3=py36h5429711_0 - defaults/linux-64::numba==0.43.1=py36h962f231_0 - defaults/linux-64::mkl_fft==1.0.10=py36ha843d7b_0 - defaults/linux-64::mkl_random==1.0.2=py36hd81dba3_0 - defaults/linux-64::numexpr==2.6.9=py36h9e4a6bb_0 - defaults/linux-64::numpy==1.16.2=py36h7e9f1db_0 - defaults/linux-64::urllib3==1.24.1=py36_0 - defaults/linux-64::ipykernel==5.1.0=py36h39e3cac_0 - defaults/linux-64::requests==2.21.0=py36_0 - defaults/linux-64::anaconda-client==1.7.2=py36_0 - defaults/linux-64::jupyter_console==6.0.0=py36_0 - defaults/linux-64::numpy-base==1.16.2=py36hde5b4d6_0 - defaults/linux-64::get_terminal_size==1.0.0=haa9412d_0 - defaults/linux-64::qtconsole==4.4.3=py36_0 - defaults/linux-64::scipy==1.2.1=py36h7c811a0_0 - defaults/linux-64::pandas==0.24.2=py36he6710b0_0 - defaults/linux-64::pytables==3.5.1=py36h71ec239_0 - defaults/linux-64::pytest-doctestplus==0.3.0=py36_0 - defaults/linux-64::anaconda-project==0.8.2=py36_0 - defaults/linux-64::jupyterlab_launcher==0.13.1=py36_0 - defaults/linux-64::pywavelets==1.0.2=py36hdd07704_0 - defaults/linux-64::jupyterlab_server==0.2.0=py36_0 - defaults/linux-64::bkcharts==0.2=py36h735825a_0 - defaults/linux-64::nbpresent==3.0.2=py36_1 - defaults/linux-64::numpydoc==0.8.0=py36_0 - defaults/linux-64::widgetsnbextension==3.4.2=py36_0 - defaults/linux-64::ipywidgets==7.4.2=py36_0 - defaults/linux-64::dask==1.1.4=py36_1 - defaults/linux-64::nb_conda==2.2.1=py36_0 - defaults/linux-64::scikit-image==0.14.2=py36he6710b0_0 - defaults/linux-64::scikit-learn==0.20.3=py36hd81dba3_0 - defaults/linux-64::astropy==3.1.2=py36h7b6447c_0 - defaults/linux-64::jupyter==1.0.0=py36_7 - defaults/linux-64::seaborn==0.9.0=py36_0 - defaults/linux-64::_nb_ext_conf==0.4.0=py36_1 - defaults/linux-64::nb_anacondacloud==1.4.0=py36_0 - defaults/linux-64::bottleneck==1.2.1=py36h035aef0_1 - defaults/linux-64::datashape==0.5.4=py36_1 - defaults/linux-64::pyqtgraph==0.10.0=py36h28b3542_3 - defaults/linux-64::pytest-arraydiff==0.3=py36h39e3cac_0 - defaults/linux-64::patsy==0.5.1=py36_0 - defaults/linux-64::pytest-astropy==0.5.0=py36_0 - defaults/linux-64::statsmodels==0.9.0=py36h035aef0_0 done ## Package Plan ## environment location: /APSshare/anaconda3/x86_64 added / updated specs: - conda The following packages will be downloaded: package | build ---------------------------|----------------- _libgcc_mutex-0.1 | main 3 KB cffi-1.12.3 | py36h2e261b9_0 222 KB chardet-3.0.4 | py36_1003 197 KB cryptography-2.7 | py36h1ba5d50_0 617 KB libgcc-ng-9.1.0 | hdf63c60_0 8.1 MB openssl-1.1.1c | h7b6447c_1 3.8 MB pip-19.2.2 | py36_0 1.9 MB pysocks-1.7.0 | py36_0 29 KB python-3.6.9 | h265db76_0 34.4 MB requests-2.22.0 | py36_0 89 KB setuptools-41.0.1 | py36_0 656 KB sqlite-3.29.0 | h7b6447c_0 1.9 MB urllib3-1.24.2 | py36_0 153 KB wheel-0.33.4 | py36_0 40 KB ------------------------------------------------------------ Total: 52.1 MB The following NEW packages will be INSTALLED: _libgcc_mutex pkgs/main/linux-64::_libgcc_mutex-0.1-main The following packages will be UPDATED: cffi 1.12.2-py36h2e261b9_1 --> 1.12.3-py36h2e261b9_0 chardet 3.0.4-py36_1 --> 3.0.4-py36_1003 cryptography 2.6.1-py36h1ba5d50_0 --> 2.7-py36h1ba5d50_0 libgcc-ng 8.2.0-hdf63c60_1 --> 9.1.0-hdf63c60_0 openssl conda-forge::openssl-1.1.1b-h14c3975_1 --> pkgs/main::openssl-1.1.1c-h7b6447c_1 pip 19.0.3-py36_0 --> 19.2.2-py36_0 pysocks 1.6.8-py36_0 --> 1.7.0-py36_0 python 3.6.8-h0371630_0 --> 3.6.9-h265db76_0 requests 2.21.0-py36_0 --> 2.22.0-py36_0 setuptools 40.8.0-py36_0 --> 41.0.1-py36_0 sqlite 3.27.2-h7b6447c_0 --> 3.29.0-h7b6447c_0 urllib3 1.24.1-py36_0 --> 1.24.2-py36_0 wheel 0.33.1-py36_0 --> 0.33.4-py36_0 conda update --all Collecting package metadata: done Solving environment: | The environment is inconsistent, please check the package plan carefully The following packages are causing the inconsistency: - defaults/linux-64::anaconda==custom=py36hbbc8b67_0 done ## Package Plan ## environment location: /APSshare/anaconda3/x86_64 The following packages will be downloaded: package | build ---------------------------|----------------- anaconda-project-0.8.3 | py_0 212 KB argcomplete-1.10.0 | py36_0 47 KB astropy-3.2.1 | py36h7b6447c_0 7.2 MB babel-2.7.0 | py_0 5.8 MB backports-1.0 | py_2 139 KB beautifulsoup4-4.8.0 | py36_0 147 KB bitarray-1.0.1 | py36h7b6447c_0 60 KB blosc-1.16.3 | hd408876_0 82 KB bokeh-1.3.4 | py36_0 4.0 MB bzip2-1.0.8 | h7b6447c_0 105 KB cloudpickle-1.2.1 | py_0 28 KB conda-build-3.18.9 | py36_3 527 KB conda-package-handling-1.3.11| py36_0 260 KB curl-7.65.2 | hbc83047_0 141 KB cython-0.29.13 | py36he6710b0_0 2.2 MB cytoolz-0.10.0 | py36h7b6447c_0 439 KB dask-2.3.0 | py_0 12 KB dask-core-2.3.0 | py_0 577 KB defusedxml-0.6.0 | py_0 23 KB dill-0.3.0 | py36_0 116 KB distributed-2.3.1 | py_0 378 KB docutils-0.15.2 | py36_0 742 KB fastcache-1.1.0 | py36h7b6447c_0 31 KB filelock-3.0.12 | py_0 12 KB flask-1.1.1 | py_0 73 KB flask-cors-3.0.8 | py_0 17 KB fsspec-0.4.0 | py_0 41 KB glob2-0.7 | py_0 14 KB html5lib-1.0.1 | py_0 89 KB importlib_metadata-0.19 | py36_0 40 KB intel-openmp-2019.4 | 243 876 KB ipykernel-5.1.2 | py36h39e3cac_0 165 KB ipython-7.7.0 | py36h39e3cac_0 1.1 MB ipywidgets-7.5.1 | py_0 107 KB isort-4.3.21 | py36_0 68 KB jdcal-1.4.1 | py_0 11 KB jedi-0.15.1 | py36_0 721 KB jinja2-2.10.1 | py36_0 188 KB joblib-0.13.2 | py36_0 365 KB json5-0.8.5 | py_0 25 KB jsonschema-3.0.2 | py36_0 90 KB jupyter_client-5.3.1 | py_0 69 KB jupyter_core-4.5.0 | py_0 48 KB jupyterlab-1.0.2 | py36hf63ae98_0 13.6 MB jupyterlab_server-1.0.0 | py_1 25 KB kiwisolver-1.1.0 | py36he6710b0_0 90 KB lazy-object-proxy-1.4.1 | py36h7b6447c_0 30 KB libcurl-7.65.2 | h20c2e04_0 588 KB libpng-1.6.37 | hbc83047_0 364 KB libssh2-1.8.2 | h1ba5d50_0 250 KB libstdcxx-ng-9.1.0 | hdf63c60_0 4.0 MB libxml2-2.9.9 | hea5a465_1 2.0 MB llvmlite-0.29.0 | py36hd408876_0 17.7 MB lxml-4.4.1 | py36hefd8a0e_0 1.6 MB matplotlib-3.1.0 | py36h5429711_0 6.7 MB mkl-2019.4 | 243 204.1 MB mkl-service-2.0.2 | py36h7b6447c_0 70 KB mkl_fft-1.0.14 | py36ha843d7b_0 173 KB mock-3.0.5 | py36_0 47 KB more-itertools-7.2.0 | py36_0 99 KB nb_conda_kernels-2.2.2 | py36_0 37 KB nbconvert-5.5.0 | py_0 381 KB networkx-2.3 | py_0 1.1 MB nltk-3.4.4 | py36_0 2.1 MB notebook-6.0.0 | py36_0 6.0 MB numba-0.45.1 | py36h962f231_0 3.1 MB numexpr-2.7.0 | py36h9e4a6bb_0 196 KB numpy-1.16.4 | py36h7e9f1db_0 49 KB numpy-base-1.16.4 | py36hde5b4d6_0 4.4 MB numpydoc-0.9.1 | py_0 31 KB openpyxl-2.6.2 | py_0 157 KB packaging-19.1 | py36_0 46 KB pandas-0.25.0 | py36he6710b0_0 11.4 MB parso-0.5.1 | py_0 68 KB partd-1.0.0 | py_0 19 KB path.py-12.0.1 | py_0 23 KB pathlib2-2.3.4 | py36_0 36 KB pexpect-4.7.0 | py36_0 82 KB pillow-6.1.0 | py36h34e0f95_0 642 KB pluggy-0.12.0 | py_0 20 KB prometheus_client-0.7.1 | py_0 42 KB psutil-5.6.3 | py36h7b6447c_0 328 KB pyasn1-0.4.6 | py_0 56 KB pyasn1-modules-0.2.6 | py36_0 119 KB pycurl-7.43.0.3 | py36h1ba5d50_0 70 KB pygments-2.4.2 | py_0 664 KB pyodbc-4.0.27 | py36he6710b0_0 70 KB pyparsing-2.4.2 | py_0 61 KB pyresttable-2020.0.2 | py_0 24 KB aps-anl-tag pytables-3.5.2 | py36h71ec239_1 1.5 MB pytest-5.0.1 | py36_0 353 KB pytest-remotedata-0.3.2 | py36_0 15 KB python-libarchive-c-2.8 | py36_13 23 KB pytz-2019.2 | py_0 245 KB pywavelets-1.0.3 | py36hdd07704_1 4.4 MB pyyaml-5.1.2 | py36h7b6447c_0 189 KB pyzmq-18.1.0 | py36he6710b0_0 520 KB qtconsole-4.5.4 | py_0 94 KB qtpy-1.9.0 | py_0 39 KB ripgrep-0.10.0 | hc07d326_0 1.4 MB rope-0.14.0 | py_0 113 KB scikit-image-0.15.0 | py36he6710b0_0 28.4 MB scikit-learn-0.21.2 | py36hd81dba3_0 6.7 MB scipy-1.3.1 | py36h7c811a0_0 18.1 MB snowballstemmer-1.9.0 | py_0 53 KB soupsieve-1.9.2 | py36_0 61 KB spec2nexus-2021.1.3 | h39e3cac_0 8.8 MB aps-anl-tag sphinx-2.1.2 | py_0 1.4 MB sphinxcontrib-applehelp-1.0.1| py_0 29 KB sphinxcontrib-devhelp-1.0.1| py_0 23 KB sphinxcontrib-htmlhelp-1.0.2| py_0 28 KB sphinxcontrib-jsmath-1.0.1 | py_0 8 KB sphinxcontrib-qthelp-1.0.2 | py_0 26 KB sphinxcontrib-serializinghtml-1.1.3| py_0 24 KB sphinxcontrib-websupport-1.1.2| py_0 35 KB spyder-3.3.6 | py36_0 2.5 MB spyder-kernels-0.5.1 | py36_0 69 KB sqlalchemy-1.3.7 | py36h7b6447c_0 1.7 MB statsmodels-0.10.1 | py36hdd07704_0 9.6 MB sympy-1.4 | py36_0 9.7 MB tblib-1.4.0 | py_0 14 KB terminado-0.8.2 | py36_0 22 KB toolz-0.10.0 | py_0 50 KB tornado-6.0.3 | py36h7b6447c_0 643 KB tqdm-4.32.1 | py_0 48 KB typed-ast-1.3.4 | py36h7b6447c_0 207 KB werkzeug-0.15.5 | py_0 256 KB widgetsnbextension-3.5.1 | py36_0 1.8 MB wrapt-1.11.2 | py36h7b6447c_0 48 KB wurlitzer-1.0.3 | py36_0 14 KB xlsxwriter-1.1.8 | py_0 105 KB zict-1.0.0 | py_0 12 KB zipp-0.5.2 | py_0 8 KB ------------------------------------------------------------ Total: 409.4 MB The following NEW packages will be INSTALLED: conda-package-han~ pkgs/main/linux-64::conda-package-handling-1.3.11-py36_0 fsspec pkgs/main/noarch::fsspec-0.4.0-py_0 joblib pkgs/main/linux-64::joblib-0.13.2-py36_0 json5 pkgs/main/noarch::json5-0.8.5-py_0 mock pkgs/main/linux-64::mock-3.0.5-py36_0 ripgrep pkgs/main/linux-64::ripgrep-0.10.0-hc07d326_0 sphinxcontrib-app~ pkgs/main/noarch::sphinxcontrib-applehelp-1.0.1-py_0 sphinxcontrib-dev~ pkgs/main/noarch::sphinxcontrib-devhelp-1.0.1-py_0 sphinxcontrib-htm~ pkgs/main/noarch::sphinxcontrib-htmlhelp-1.0.2-py_0 sphinxcontrib-jsm~ pkgs/main/noarch::sphinxcontrib-jsmath-1.0.1-py_0 sphinxcontrib-qth~ pkgs/main/noarch::sphinxcontrib-qthelp-1.0.2-py_0 sphinxcontrib-ser~ pkgs/main/noarch::sphinxcontrib-serializinghtml-1.1.3-py_0 The following packages will be UPDATED: anaconda-project pkgs/main/linux-64::anaconda-project-~ --> pkgs/main/noarch::anaconda-project-0.8.3-py_0 argcomplete 1.9.5-py36_0 --> 1.10.0-py36_0 astropy 3.1.2-py36h7b6447c_0 --> 3.2.1-py36h7b6447c_0 babel pkgs/main/linux-64::babel-2.6.0-py36_0 --> pkgs/main/noarch::babel-2.7.0-py_0 backports pkgs/main/linux-64::backports-1.0-py3~ --> pkgs/main/noarch::backports-1.0-py_2 beautifulsoup4 4.7.1-py36_1 --> 4.8.0-py36_0 bitarray 0.8.3-py36h14c3975_0 --> 1.0.1-py36h7b6447c_0 blosc 1.15.0-hd408876_0 --> 1.16.3-hd408876_0 bokeh 1.0.4-py36_0 --> 1.3.4-py36_0 bzip2 1.0.6-h14c3975_5 --> 1.0.8-h7b6447c_0 cloudpickle pkgs/main/linux-64::cloudpickle-0.8.0~ --> pkgs/main/noarch::cloudpickle-1.2.1-py_0 conda-build 3.17.8-py36_0 --> 3.18.9-py36_3 curl 7.64.0-hbc83047_2 --> 7.65.2-hbc83047_0 cython 0.29.6-py36he6710b0_0 --> 0.29.13-py36he6710b0_0 cytoolz 0.9.0.1-py36h14c3975_1 --> 0.10.0-py36h7b6447c_0 dask pkgs/main/linux-64::dask-1.1.4-py36_1 --> pkgs/main/noarch::dask-2.3.0-py_0 dask-core pkgs/main/linux-64::dask-core-1.1.4-p~ --> pkgs/main/noarch::dask-core-2.3.0-py_0 defusedxml pkgs/main/linux-64::defusedxml-0.5.0-~ --> pkgs/main/noarch::defusedxml-0.6.0-py_0 dill 0.2.9-py36_0 --> 0.3.0-py36_0 distributed pkgs/main/linux-64::distributed-1.26.~ --> pkgs/main/noarch::distributed-2.3.1-py_0 docutils 0.14-py36hb0f60f5_0 --> 0.15.2-py36_0 fastcache 1.0.2-py36h14c3975_2 --> 1.1.0-py36h7b6447c_0 filelock pkgs/main/linux-64::filelock-3.0.10-p~ --> pkgs/main/noarch::filelock-3.0.12-py_0 flask pkgs/main/linux-64::flask-1.0.2-py36_1 --> pkgs/main/noarch::flask-1.1.1-py_0 flask-cors pkgs/main/linux-64::flask-cors-3.0.7-~ --> pkgs/main/noarch::flask-cors-3.0.8-py_0 glob2 pkgs/main/linux-64::glob2-0.6-py36_1 --> pkgs/main/noarch::glob2-0.7-py_0 importlib_metadata 0.8-py36_0 --> 0.19-py36_0 intel-openmp 2019.3-199 --> 2019.4-243 ipykernel 5.1.0-py36h39e3cac_0 --> 5.1.2-py36h39e3cac_0 ipython 7.4.0-py36h39e3cac_0 --> 7.7.0-py36h39e3cac_0 ipywidgets pkgs/main/linux-64::ipywidgets-7.4.2-~ --> pkgs/main/noarch::ipywidgets-7.5.1-py_0 isort 4.3.16-py36_0 --> 4.3.21-py36_0 jdcal pkgs/main/linux-64::jdcal-1.4-py36_0 --> pkgs/main/noarch::jdcal-1.4.1-py_0 jedi 0.13.3-py36_0 --> 0.15.1-py36_0 jinja2 2.10-py36_0 --> 2.10.1-py36_0 jsonschema 3.0.1-py36_0 --> 3.0.2-py36_0 jupyter_client pkgs/main/linux-64::jupyter_client-5.~ --> pkgs/main/noarch::jupyter_client-5.3.1-py_0 jupyter_core pkgs/main/linux-64::jupyter_core-4.4.~ --> pkgs/main/noarch::jupyter_core-4.5.0-py_0 jupyterlab 0.35.4-py36hf63ae98_0 --> 1.0.2-py36hf63ae98_0 jupyterlab_server pkgs/main/linux-64::jupyterlab_server~ --> pkgs/main/noarch::jupyterlab_server-1.0.0-py_1 kiwisolver 1.0.1-py36hf484d3e_0 --> 1.1.0-py36he6710b0_0 lazy-object-proxy 1.3.1-py36h14c3975_2 --> 1.4.1-py36h7b6447c_0 libcurl 7.64.0-h20c2e04_2 --> 7.65.2-h20c2e04_0 libpng 1.6.36-hbc83047_0 --> 1.6.37-hbc83047_0 libssh2 1.8.0-h1ba5d50_4 --> 1.8.2-h1ba5d50_0 libstdcxx-ng 8.2.0-hdf63c60_1 --> 9.1.0-hdf63c60_0 libxml2 2.9.9-he19cac6_0 --> 2.9.9-hea5a465_1 llvmlite 0.28.0-py36hd408876_0 --> 0.29.0-py36hd408876_0 lxml 4.3.2-py36hefd8a0e_0 --> 4.4.1-py36hefd8a0e_0 matplotlib 3.0.3-py36h5429711_0 --> 3.1.0-py36h5429711_0 mkl 2019.3-199 --> 2019.4-243 mkl-service 1.1.2-py36he904b0f_5 --> 2.0.2-py36h7b6447c_0 mkl_fft 1.0.10-py36ha843d7b_0 --> 1.0.14-py36ha843d7b_0 more-itertools 6.0.0-py36_0 --> 7.2.0-py36_0 nb_conda_kernels 2.2.0-py36_1 --> 2.2.2-py36_0 nbconvert pkgs/main/linux-64::nbconvert-5.4.1-p~ --> pkgs/main/noarch::nbconvert-5.5.0-py_0 networkx pkgs/main/linux-64::networkx-2.2-py36~ --> pkgs/main/noarch::networkx-2.3-py_0 nltk 3.4-py36_1 --> 3.4.4-py36_0 notebook 5.7.8-py36_0 --> 6.0.0-py36_0 numba 0.43.1-py36h962f231_0 --> 0.45.1-py36h962f231_0 numexpr 2.6.9-py36h9e4a6bb_0 --> 2.7.0-py36h9e4a6bb_0 numpy 1.16.2-py36h7e9f1db_0 --> 1.16.4-py36h7e9f1db_0 numpy-base 1.16.2-py36hde5b4d6_0 --> 1.16.4-py36hde5b4d6_0 numpydoc pkgs/main/linux-64::numpydoc-0.8.0-py~ --> pkgs/main/noarch::numpydoc-0.9.1-py_0 openpyxl pkgs/main/linux-64::openpyxl-2.6.1-py~ --> pkgs/main/noarch::openpyxl-2.6.2-py_0 packaging 19.0-py36_0 --> 19.1-py36_0 pandas 0.24.2-py36he6710b0_0 --> 0.25.0-py36he6710b0_0 parso pkgs/main/linux-64::parso-0.3.4-py36_0 --> pkgs/main/noarch::parso-0.5.1-py_0 partd pkgs/main/linux-64::partd-0.3.10-py36~ --> pkgs/main/noarch::partd-1.0.0-py_0 path.py pkgs/main/linux-64::path.py-11.5.0-py~ --> pkgs/main/noarch::path.py-12.0.1-py_0 pathlib2 2.3.3-py36_0 --> 2.3.4-py36_0 pexpect 4.6.0-py36_0 --> 4.7.0-py36_0 pillow 5.4.1-py36h34e0f95_0 --> 6.1.0-py36h34e0f95_0 pluggy pkgs/main/linux-64::pluggy-0.9.0-py36~ --> pkgs/main/noarch::pluggy-0.12.0-py_0 prometheus_client pkgs/main/linux-64::prometheus_client~ --> pkgs/main/noarch::prometheus_client-0.7.1-py_0 psutil 5.6.1-py36h7b6447c_0 --> 5.6.3-py36h7b6447c_0 pyasn1 0.4.5-py_0 --> 0.4.6-py_0 pyasn1-modules 0.2.4-py36_0 --> 0.2.6-py36_0 pycurl 7.43.0.2-py36h1ba5d50_0 --> 7.43.0.3-py36h1ba5d50_0 pygments pkgs/main/linux-64::pygments-2.3.1-py~ --> pkgs/main/noarch::pygments-2.4.2-py_0 pyodbc 4.0.26-py36he6710b0_0 --> 4.0.27-py36he6710b0_0 pyparsing pkgs/main/linux-64::pyparsing-2.3.1-p~ --> pkgs/main/noarch::pyparsing-2.4.2-py_0 pyresttable prjemian::pyresttable-2019.0321.0-py_0 --> aps-anl-tag::pyresttable-2020.0.2-py_0 pytables 3.5.1-py36h71ec239_0 --> 3.5.2-py36h71ec239_1 pytest 4.3.1-py36_0 --> 5.0.1-py36_0 pytest-remotedata 0.3.1-py36_0 --> 0.3.2-py36_0 python-libarchive~ 2.8-py36_6 --> 2.8-py36_13 pytz pkgs/main/linux-64::pytz-2018.9-py36_0 --> pkgs/main/noarch::pytz-2019.2-py_0 pywavelets 1.0.2-py36hdd07704_0 --> 1.0.3-py36hdd07704_1 pyyaml 5.1-py36h7b6447c_0 --> 5.1.2-py36h7b6447c_0 pyzmq 18.0.0-py36he6710b0_0 --> 18.1.0-py36he6710b0_0 qtconsole pkgs/main/linux-64::qtconsole-4.4.3-p~ --> pkgs/main/noarch::qtconsole-4.5.4-py_0 qtpy pkgs/main/linux-64::qtpy-1.7.0-py36_1 --> pkgs/main/noarch::qtpy-1.9.0-py_0 rope pkgs/main/linux-64::rope-0.12.0-py36_0 --> pkgs/main/noarch::rope-0.14.0-py_0 scikit-image 0.14.2-py36he6710b0_0 --> 0.15.0-py36he6710b0_0 scikit-learn 0.20.3-py36hd81dba3_0 --> 0.21.2-py36hd81dba3_0 scipy 1.2.1-py36h7c811a0_0 --> 1.3.1-py36h7c811a0_0 snowballstemmer pkgs/main/linux-64::snowballstemmer-1~ --> pkgs/main/noarch::snowballstemmer-1.9.0-py_0 soupsieve 1.8-py36_0 --> 1.9.2-py36_0 spec2nexus prjemian::spec2nexus-2020.0.0-pyh39e3~ --> aps-anl-tag::spec2nexus-2021.1.3-h39e3cac_0 sphinx pkgs/main/linux-64::sphinx-1.8.5-py36~ --> pkgs/main/noarch::sphinx-2.1.2-py_0 sphinxcontrib-web~ pkgs/main/linux-64::sphinxcontrib-web~ --> pkgs/main/noarch::sphinxcontrib-websupport-1.1.2-py_0 spyder 3.3.3-py36_0 --> 3.3.6-py36_0 spyder-kernels 0.4.2-py36_0 --> 0.5.1-py36_0 sqlalchemy 1.3.1-py36h7b6447c_0 --> 1.3.7-py36h7b6447c_0 statsmodels 0.9.0-py36h035aef0_0 --> 0.10.1-py36hdd07704_0 sympy 1.3-py36_0 --> 1.4-py36_0 tblib pkgs/main/linux-64::tblib-1.3.2-py36h~ --> pkgs/main/noarch::tblib-1.4.0-py_0 terminado 0.8.1-py36_1 --> 0.8.2-py36_0 toolz pkgs/main/linux-64::toolz-0.9.0-py36_0 --> pkgs/main/noarch::toolz-0.10.0-py_0 tornado 6.0.2-py36h7b6447c_0 --> 6.0.3-py36h7b6447c_0 tqdm pkgs/main/linux-64::tqdm-4.31.1-py36_1 --> pkgs/main/noarch::tqdm-4.32.1-py_0 typed-ast 1.3.1-py36h7b6447c_0 --> 1.3.4-py36h7b6447c_0 werkzeug pkgs/main/linux-64::werkzeug-0.14.1-p~ --> pkgs/main/noarch::werkzeug-0.15.5-py_0 widgetsnbextension 3.4.2-py36_0 --> 3.5.1-py36_0 wrapt 1.11.1-py36h7b6447c_0 --> 1.11.2-py36h7b6447c_0 wurlitzer 1.0.2-py36_0 --> 1.0.3-py36_0 xlsxwriter pkgs/main/linux-64::xlsxwriter-1.1.5-~ --> pkgs/main/noarch::xlsxwriter-1.1.8-py_0 zict pkgs/main/linux-64::zict-0.1.4-py36_0 --> pkgs/main/noarch::zict-1.0.0-py_0 zipp pkgs/main/linux-64::zipp-0.3.3-py36_1 --> pkgs/main/noarch::zipp-0.5.2-py_0 The following packages will be SUPERSEDED by a higher-priority channel: html5lib pkgs/main/linux-64::html5lib-1.0.1-py~ --> pkgs/main/noarch::html5lib-1.0.1-py_0 The following packages will be DOWNGRADED: bkcharts 0.2-py36h735825a_0 --> 0.2-py36_0 contextlib2 0.5.5-py36h6c84a62_0 --> 0.5.5-py36_0 cycler 0.10.0-py36h93f1223_0 --> 0.10.0-py36_0 et_xmlfile 1.0.1-py36hd6bccc3_0 --> 1.0.1-py36_0 ipython_genutils 0.2.0-py36hb52b0d5_0 --> 0.2.0-py36_0 locket 0.2.0-py36h787c0ad_1 --> 0.2.0-py36_1 nbformat 4.4.0-py36h31c9010_0 --> 4.4.0-py36_0 singledispatch 3.4.0.3-py36h7a266c3_0 --> 3.4.0.3-py36_0 traitlets 4.3.2-py36h674d592_0 --> 4.3.2-py36_0 unicodecsv 0.14.1-py36ha668878_0 --> 0.14.1-py36_0 wcwidth 0.1.7-py36hdf4376a_0 --> 0.1.7-py36_0 xlwt 1.3.0-py36h7b00a1f_0 --> 1.3.0-py36_0 conda install -c apsu epics-base Collecting package metadata: done Solving environment: | The environment is inconsistent, please check the package plan carefully The following packages are causing the inconsistency: - defaults/linux-64::anaconda==custom=py36hbbc8b67_0 done ## Package Plan ## environment location: /APSshare/anaconda3/x86_64 added / updated specs: - epics-base The following packages will be downloaded: package | build ---------------------------|----------------- epics-base-7.0.3 | pl526_1 54.5 MB apsu perl-5.26.2 | h14c3975_0 15.9 MB ------------------------------------------------------------ Total: 70.3 MB The following NEW packages will be INSTALLED: epics-base apsu/linux-64::epics-base-7.0.3-pl526_1 perl pkgs/main/linux-64::perl-5.26.2-h14c3975_0 conda install -c conda-forge sparse pyepics pyRestTable Collecting package metadata: done Solving environment: \ The environment is inconsistent, please check the package plan carefully The following packages are causing the inconsistency: - defaults/linux-64::anaconda==custom=py36hbbc8b67_0 done ## Package Plan ## environment location: /APSshare/anaconda3/x86_64 added / updated specs: - pyepics - pyresttable - sparse The following packages will be downloaded: package | build ---------------------------|----------------- ca-certificates-2019.6.16 | hecc5488_0 145 KB conda-forge certifi-2019.6.16 | py36_1 149 KB conda-forge conda-4.7.11 | py36_0 3.0 MB conda-forge openssl-1.1.1c | h516909a_0 2.1 MB conda-forge pyepics-3.4.0 | py36_1 183 KB conda-forge sparse-0.7.0 | py_0 39 KB conda-forge ------------------------------------------------------------ Total: 5.6 MB The following NEW packages will be INSTALLED: pyepics conda-forge/linux-64::pyepics-3.4.0-py36_1 sparse conda-forge/noarch::sparse-0.7.0-py_0 The following packages will be UPDATED: ca-certificates 2019.3.9-hecc5488_0 --> 2019.6.16-hecc5488_0 certifi 2019.3.9-py36_0 --> 2019.6.16-py36_1 conda 4.6.14-py36_0 --> 4.7.11-py36_0 The following packages will be SUPERSEDED by a higher-priority channel: openssl pkgs/main::openssl-1.1.1c-h7b6447c_1 --> conda-forge::openssl-1.1.1c-h516909a_0 conda update anaconda # Wow! This takes more than 60 min to complete! Finding shortest conflict path for pip: # Follow-up. No return from this command after more than 2 hours. # Try to resolve incompatibilities piecewise. conda update pandoc #------------------------ # Even more trouble at this point. # Stopping all maintenance activity on this installation for today. # Requested IT to restore /APSshare/anaconda3/x86_64 from backup # Alternative is to reinstall from scratch using the export file. #------------------------ conda clean -a conda env export | tee 20190823_x86_64_export-after.txt ```

prjemian commented 4 years ago

So, restored from backups and prepare to practice elsewhere

8/28 restore notes

``` 2019-08-28: restoring APSshare/anaconda3/x86_64 from backup from before maintenance on 2019-08-23 Picking backup from May 16 drwxrwxr-x 30 aesbc 4096 Aug 23 12:29 x86_64/ drwxrwxr-x 29 aesbc 4096 May 16 21:27 x86_64-RESTORED/ will practice this update from a clone (conda env export) file: 20190823_x86_64_export-before.txt Might have to delete and replace with new install. Maybe. ```

Until then, waiting to install:

conda install -c conda-forge sparse pyepics pyRestTable

prjemian commented 4 years ago

Just the command plan:

    conda install -c conda-forge sparse pyepics pyRestTable
    from before maintenance on 2019-08-23
    Picking backup from May 16
    cd /APSshare/anaconda3
    source ./x86_64/bin/activate
    conda env export | tee 20190823_x86_64_export-before.txt
    conda update conda
    conda update --all
    conda install -c apsu epics-base
    conda install -c conda-forge sparse pyepics pyRestTable
    conda update anaconda
    conda update pandoc
    conda clean -a
    conda env export | tee 20190823_x86_64_export-after.txt

Trouble started here:

    conda update anaconda
        # Wow!  This takes more than 60 min to complete!  Finding shortest conflict path for pip:
        # Follow-up.  No return from this command after more than 2 hours.
        # Try to resolve incompatibilities piecewise.

prjemian commented 4 years ago

Can this file be used to recreate in a different directory?

20190823_x86_64_export-before.txt

``` name: base channels: - conda-forge - aps-anl-tag - aps-anl-dev - prjemian - defaults dependencies: - _license=1.1=py36_1 - _nb_ext_conf=0.4.0=py36_1 - alabaster=0.7.12=py36_0 - anaconda=custom=py36hbbc8b67_0 - anaconda-clean=1.1.0=py36_1 - anaconda-client=1.7.2=py36_0 - anaconda-navigator=1.9.7=py36_0 - anaconda-project=0.8.2=py36_0 - appdirs=1.4.3=py36h28b3542_0 - argcomplete=1.9.5=py36_0 - asn1crypto=0.24.0=py36_0 - astroid=2.2.5=py36_0 - astropy=3.1.2=py36h7b6447c_0 - atomicwrites=1.3.0=py36_1 - attrs=19.1.0=py36_1 - automat=0.7.0=py36_0 - babel=2.6.0=py36_0 - backcall=0.1.0=py36_0 - backports=1.0=py36_1 - backports.os=0.1.1=py36_0 - backports.shutil_get_terminal_size=1.0.0=py36_2 - bcrypt=3.1.6=py36h7b6447c_0 - beautifulsoup4=4.7.1=py36_1 - bitarray=0.8.3=py36h14c3975_0 - bkcharts=0.2=py36h735825a_0 - blas=1.0=mkl - blaze=0.11.3=py36_0 - bleach=3.1.0=py36_0 - blosc=1.15.0=hd408876_0 - bokeh=1.0.4=py36_0 - boto=2.49.0=py36_0 - bottleneck=1.2.1=py36h035aef0_1 - bzip2=1.0.6=h14c3975_5 - ca-certificates=2019.3.9=hecc5488_0 - cairo=1.14.12=h8948797_3 - certifi=2019.3.9=py36_0 - cffi=1.12.2=py36h2e261b9_1 - chardet=3.0.4=py36_1 - chest=0.2.3=py36_1 - click=7.0=py36_0 - cloudpickle=0.8.0=py36_0 - clyent=1.2.2=py36_1 - colorama=0.4.1=py36_0 - conda=4.6.14=py36_0 - conda-build=3.17.8=py36_0 - conda-env=2.6.0=1 - configobj=5.0.6=py36_1 - constantly=15.1.0=py36h28b3542_0 - contextlib2=0.5.5=py36h6c84a62_0 - cryptography=2.6.1=py36h1ba5d50_0 - curl=7.64.0=hbc83047_2 - cycler=0.10.0=py36h93f1223_0 - cython=0.29.6=py36he6710b0_0 - cytoolz=0.9.0.1=py36h14c3975_1 - dask=1.1.4=py36_1 - dask-core=1.1.4=py36_1 - datashape=0.5.4=py36_1 - dbus=1.13.6=h746ee38_0 - decorator=4.4.0=py36_1 - defusedxml=0.5.0=py36_1 - dill=0.2.9=py36_0 - distributed=1.26.0=py36_1 - docutils=0.14=py36hb0f60f5_0 - dynd-python=removed=0 - entrypoints=0.3=py36_0 - et_xmlfile=1.0.1=py36hd6bccc3_0 - expat=2.2.6=he6710b0_0 - fastcache=1.0.2=py36h14c3975_2 - filelock=3.0.10=py36_0 - flask=1.0.2=py36_1 - flask-cors=3.0.7=py36_0 - fontconfig=2.13.0=h9420a91_0 - freetype=2.9.1=h8a8886c_1 - fribidi=1.0.5=h7b6447c_0 - get_terminal_size=1.0.0=haa9412d_0 - gettext=0.19.8.1=hd7bead4_3 - gevent=1.4.0=py36h7b6447c_0 - glib=2.56.2=hd408876_0 - glob2=0.6=py36_1 - gmp=6.1.2=h6c8ec71_1 - gmpy2=2.0.8=py36h10f8cd9_2 - graphite2=1.3.13=h23475e2_0 - greenlet=0.4.15=py36h7b6447c_0 - gst-plugins-base=1.14.0=hbbd80ab_1 - gstreamer=1.14.0=hb453b48_1 - h5py=2.9.0=py36h7918eee_0 - harfbuzz=1.8.8=hffaf4a1_0 - hdf5=1.10.4=hb1b8bf9_0 - heapdict=1.0.0=py36_2 - html5lib=1.0.1=py36_0 - hyperlink=19.0.0=py_0 - icalendar=4.0.3=py_0 - icu=58.2=h9c2bf20_1 - idna=2.8=py36_0 - imageio=2.5.0=py36_0 - imagesize=1.1.0=py36_0 - importlib_metadata=0.8=py36_0 - incremental=17.5.0=py36_0 - intel-openmp=2019.3=199 - ipykernel=5.1.0=py36h39e3cac_0 - ipython=7.4.0=py36h39e3cac_0 - ipython_genutils=0.2.0=py36hb52b0d5_0 - ipywidgets=7.4.2=py36_0 - isort=4.3.16=py36_0 - itsdangerous=1.1.0=py36_0 - jbig=2.1=hdba287a_0 - jdcal=1.4=py36_0 - jedi=0.13.3=py36_0 - jeepney=0.4=py36_0 - jinja2=2.10=py36_0 - jpeg=9b=h024ee3a_2 - jsonschema=3.0.1=py36_0 - jupyter=1.0.0=py36_7 - jupyter_client=5.2.4=py36_0 - jupyter_console=6.0.0=py36_0 - jupyter_core=4.4.0=py36_0 - jupyterlab=0.35.4=py36hf63ae98_0 - jupyterlab_launcher=0.13.1=py36_0 - jupyterlab_server=0.2.0=py36_0 - keyring=18.0.0=py36_0 - kiwisolver=1.0.1=py36hf484d3e_0 - krb5=1.16.1=h173b8e3_7 - lazy-object-proxy=1.3.1=py36h14c3975_2 - libarchive=3.3.3=h5d8350f_5 - libcurl=7.64.0=h20c2e04_2 - libdynd=0.7.2=0 - libedit=3.1.20181209=hc058e9b_0 - libffi=3.2.1=hd88cf55_4 - libgcc=7.2.0=h69d50b8_2 - libgcc-ng=8.2.0=hdf63c60_1 - libgfortran=3.0.0=1 - libgfortran-ng=7.3.0=hdf63c60_0 - libglu=9.0.0=hf484d3e_1 - liblief=0.9.0=h7725739_2 - libpng=1.6.36=hbc83047_0 - libsodium=1.0.16=h1bed415_0 - libssh2=1.8.0=h1ba5d50_4 - libstdcxx-ng=8.2.0=hdf63c60_1 - libtiff=4.0.10=h2733197_2 - libtool=2.4.6=h7b6447c_5 - libuuid=1.0.3=h1bed415_2 - libxcb=1.13=h1bed415_1 - libxml2=2.9.9=he19cac6_0 - libxslt=1.1.33=h7d1a2b0_0 - llvmlite=0.28.0=py36hd408876_0 - locket=0.2.0=py36h787c0ad_1 - lxml=4.3.2=py36hefd8a0e_0 - lz4-c=1.8.1.2=h14c3975_0 - lzo=2.10=h49e0be7_2 - markupsafe=1.1.1=py36h7b6447c_0 - matplotlib=3.0.3=py36h5429711_0 - mccabe=0.6.1=py36_1 - mistune=0.8.4=py36h7b6447c_0 - mkl=2019.3=199 - mkl-service=1.1.2=py36he904b0f_5 - mkl_fft=1.0.10=py36ha843d7b_0 - mkl_random=1.0.2=py36hd81dba3_0 - more-itertools=6.0.0=py36_0 - mpc=1.1.0=h10f8cd9_1 - mpfr=4.0.1=hdf1c602_3 - mpmath=1.1.0=py36_0 - msgpack-python=0.6.1=py36hfd86e86_1 - multipledispatch=0.6.0=py36_0 - nb_anacondacloud=1.4.0=py36_0 - nb_conda=2.2.1=py36_0 - nb_conda_kernels=2.2.0=py36_1 - nbconvert=5.4.1=py36_3 - nbformat=4.4.0=py36h31c9010_0 - nbpresent=3.0.2=py36_1 - ncurses=6.1=he6710b0_1 - networkx=2.2=py36_1 - nltk=3.4=py36_1 - nose=1.3.7=py36_2 - notebook=5.7.8=py36_0 - numba=0.43.1=py36h962f231_0 - numexpr=2.6.9=py36h9e4a6bb_0 - numpy=1.16.2=py36h7e9f1db_0 - numpy-base=1.16.2=py36hde5b4d6_0 - numpydoc=0.8.0=py36_0 - odo=0.5.1=py36_0 - olefile=0.46=py36_0 - openpyxl=2.6.1=py36_1 - openssl=1.1.1b=h14c3975_1 - packaging=19.0=py36_0 - pandas=0.24.2=py36he6710b0_0 - pandoc=2.2.3.2=0 - pandocfilters=1.4.2=py36_1 - pango=1.42.4=h049681c_0 - parso=0.3.4=py36_0 - partd=0.3.10=py36_1 - patchelf=0.9=he6710b0_3 - path.py=11.5.0=py36_0 - pathlib2=2.3.3=py36_0 - patsy=0.5.1=py36_0 - pcre=8.43=he6710b0_0 - pep8=1.7.1=py36_0 - pexpect=4.6.0=py36_0 - pickleshare=0.7.5=py36_0 - pillow=5.4.1=py36h34e0f95_0 - pip=19.0.3=py36_0 - pixman=0.38.0=h7b6447c_0 - pkginfo=1.5.0.1=py36_0 - pluggy=0.9.0=py36_0 - ply=3.11=py36_0 - prometheus_client=0.6.0=py36_0 - prompt_toolkit=2.0.9=py36_0 - psutil=5.6.1=py36h7b6447c_0 - ptyprocess=0.6.0=py36_0 - py=1.8.0=py36_0 - py-lief=0.9.0=py36h7725739_2 - pyasn1=0.4.5=py_0 - pyasn1-modules=0.2.4=py36_0 - pycodestyle=2.5.0=py36_0 - pycosat=0.6.3=py36h14c3975_0 - pycparser=2.19=py36_0 - pycrypto=2.6.1=py36h14c3975_9 - pycurl=7.43.0.2=py36h1ba5d50_0 - pyflakes=2.1.1=py36_0 - pygments=2.3.1=py36_0 - pyhamcrest=1.9.0=py36_2 - pyjwt=1.7.1=py36_0 - pylint=2.3.1=py36_0 - pyodbc=4.0.26=py36he6710b0_0 - pyopenssl=19.0.0=py36_0 - pyparsing=2.3.1=py36_0 - pyqt=5.9.2=py36h05f1152_2 - pyqtgraph=0.10.0=py36h28b3542_3 - pyresttable=2019.0321.0=py_0 - pyrsistent=0.14.11=py36h7b6447c_0 - pysocks=1.6.8=py36_0 - pytables=3.5.1=py36h71ec239_0 - pytest=4.3.1=py36_0 - pytest-arraydiff=0.3=py36h39e3cac_0 - pytest-astropy=0.5.0=py36_0 - pytest-doctestplus=0.3.0=py36_0 - pytest-html=1.20.0=py36_0 - pytest-metadata=1.8.0=py36_0 - pytest-openfiles=0.3.2=py36_0 - pytest-remotedata=0.3.1=py36_0 - python=3.6.8=h0371630_0 - python-dateutil=2.8.0=py36_0 - python-libarchive-c=2.8=py36_6 - pytz=2018.9=py36_0 - pywavelets=1.0.2=py36hdd07704_0 - pyyaml=5.1=py36h7b6447c_0 - pyzmq=18.0.0=py36he6710b0_0 - qt=5.9.7=h5867ecd_1 - qtawesome=0.5.7=py36_1 - qtconsole=4.4.3=py36_0 - qtpy=1.7.0=py36_1 - readline=7.0=h7b6447c_5 - redis=5.0.3=h7b6447c_0 - redis-py=3.2.1=py_0 - requests=2.21.0=py36_0 - rope=0.12.0=py36_0 - ruamel_yaml=0.15.46=py36h14c3975_0 - scikit-image=0.14.2=py36he6710b0_0 - scikit-learn=0.20.3=py36hd81dba3_0 - scipy=1.2.1=py36h7c811a0_0 - seaborn=0.9.0=py36_0 - secretstorage=3.1.1=py36_0 - send2trash=1.5.0=py36_0 - service_identity=18.1.0=py36h28b3542_0 - setuptools=40.8.0=py36_0 - simplegeneric=0.8.1=py36_2 - singledispatch=3.4.0.3=py36h7a266c3_0 - sip=4.19.8=py36hf484d3e_0 - six=1.12.0=py36_0 - snappy=1.1.7=hbae5bb6_3 - snowballstemmer=1.2.1=py36h6febd40_0 - sockjs-tornado=1.0.6=py36_0 - sortedcollections=1.1.2=py36_0 - sortedcontainers=2.1.0=py36_0 - soupsieve=1.8=py36_0 - spec2nexus=2020.0.0=pyh39e3cac_0 - sphinx=1.8.5=py36_0 - sphinxcontrib=1.0=py36_1 - sphinxcontrib-websupport=1.1.0=py36_1 - spyder=3.3.3=py36_0 - spyder-kernels=0.4.2=py36_0 - sqlalchemy=1.3.1=py36h7b6447c_0 - sqlite=3.27.2=h7b6447c_0 - statsmodels=0.9.0=py36h035aef0_0 - sympy=1.3=py36_0 - tblib=1.3.2=py36h34cf8b6_0 - terminado=0.8.1=py36_1 - testpath=0.4.2=py36_0 - tk=8.6.8=hbc83047_0 - toolz=0.9.0=py36_0 - tornado=6.0.2=py36h7b6447c_0 - tqdm=4.31.1=py36_1 - traitlets=4.3.2=py36h674d592_0 - twisted=19.2.0=py36h7b6447c_0 - typed-ast=1.3.1=py36h7b6447c_0 - typing=3.6.4=py36_0 - unicodecsv=0.14.1=py36ha668878_0 - unixodbc=2.3.7=h14c3975_0 - urllib3=1.24.1=py36_0 - wcwidth=0.1.7=py36hdf4376a_0 - webencodings=0.5.1=py36_1 - werkzeug=0.14.1=py36_0 - wheel=0.33.1=py36_0 - widgetsnbextension=3.4.2=py36_0 - wrapt=1.11.1=py36h7b6447c_0 - wurlitzer=1.0.2=py36_0 - wxpython=4.0.4=py36hc99224d_0 - xlrd=1.2.0=py36_0 - xlsxwriter=1.1.5=py36_0 - xlwt=1.3.0=py36h7b00a1f_0 - xz=5.2.4=h14c3975_4 - yaml=0.1.7=had09818_2 - zeromq=4.3.1=he6710b0_3 - zict=0.1.4=py36_0 - zipp=0.3.3=py36_1 - zlib=1.2.11=h7b6447c_3 - zope=1.0=py36_1 - zope.interface=4.6.0=py36h7b6447c_0 - zstd=1.3.7=h0b5b093_0 - pip: - deprecated==1.2.4 - fabio==0.8.0 - hdf5plugin==1.4.1 - punx==0.2.2 - pyepics==3.3.2 - pygithub==1.43.4 - pyimm==1.0.7 - pynx==2018.2.0 - silx==0.10.0 prefix: /APSshare/anaconda3/x86_64 ```

Of course, need to change the prefix: directory.

prjemian commented 4 years ago

Create new installation for testing on wow:/local/sandbox following this guide:

conda env create -f export.yml

prjemian commented 4 years ago

Aaack! this does not work is base points to /APSshare/anaconda3/x86_64

Start with Miniconda?

prjemian commented 4 years ago

changing to:

name: demo_APSshare
prefix: /local/sandbox/anaconda3/x86_64

prjemian commented 4 years ago

So, as I believe it now, the way to proceed is to rebuild the installation from scratch. Here's the plan:

Install Anaconda
Install conda packages from requirements-conda file
Install pip packages from requirements-pip file
Install additional packages from sources as needed.

Test this first. Need the three lists of packages to install (conda, pip, other). This search (grep " install " HISTORY.txt) might be helpful.

prjemian commented 4 years ago

This almost worked:

(base) jemian@wow /local/sandbox $ conda env create -f export.yml
Collecting package metadata (repodata.json): done
Solving environment: done

Downloading and Extracting Packages
tbb-2019.8           | 1.4 MB    | ############################################################################################ | 100%
libgfortran-3.0.0    | 281 KB    | ############################################################################################ | 100%
Preparing transaction: done
Verifying transaction: done
Executing transaction: / b'Enabling nb_conda_kernels...\nStatus: enabled\n'                                                          / b'Enabling notebook extension nbpresent/js/nbpresent.min...\n      - Validating: \x1b[32mOK\x1b[0m\nEnabling: nbpresent\n- Writing config: /home/oxygen/JEMIAN/.conda/envs/demo_APSshare/etc/jupyter\n    - Validating...\n      nbpresent 3.0.2 \x1b[32mOK\x1b[0m\n'       | b'Enabling notebook extension jupyter-js-widgets/extension...\n      - Validating: \x1b[32mOK\x1b[0m\n'                              | b'Enabling notebook extension nb_anacondacloud/main...\n      - Validating: \x1b[32mOK\x1b[0m\nEnabling: nb_anacondacloud\n- Writing config: /home/oxygen/JEMIAN/.conda/envs/demo_APSshare/etc/jupyter\n    - Validating...\n      nb_anacondacloud  \x1b[32mOK\x1b[0m\n'   \ b'Enabling notebook extension nb_conda/main...\n      - Validating: \x1b[32mOK\x1b[0m\nEnabling tree extension nb_conda/tree...\n      - Validating: \x1b[32mOK\x1b[0m\nEnabling: nb_conda\n- Writing config: /home/oxygen/JEMIAN/.conda/envs/demo_APSshare/etc/jupyter\n    - Validating...\n      nb_conda 2.2.1 \x1b[32mOK\x1b[0m\n'                                                                            done
Ran pip subprocess with arguments:
['/home/oxygen/JEMIAN/.conda/envs/demo_APSshare/bin/python', '-m', 'pip', 'install', '-U', '-r', '/local/sandbox/condaenv.4drba0p0.requirements.txt']
Pip subprocess output:
Collecting deprecated==1.2.4 (from -r /local/sandbox/condaenv.4drba0p0.requirements.txt (line 1))
  Using cached https://files.pythonhosted.org/packages/a9/cb/c1a39ee51e3042df8b284e22c9c440ffad1c25f451bddd4bf9a8dc17cd75/Deprecated-1.2.4-py2.py3-none-any.whl
Collecting fabio==0.8.0 (from -r /local/sandbox/condaenv.4drba0p0.requirements.txt (line 2))
  Using cached https://files.pythonhosted.org/packages/f6/5b/45a159f412264b76e036fbc51a9c43b7364b7901450217b8fda2a3837ac3/fabio-0.8.0-cp36-cp36m-manylinux1_x86_64.whl
Collecting hdf5plugin==1.4.1 (from -r /local/sandbox/condaenv.4drba0p0.requirements.txt (line 3))
  Using cached https://files.pythonhosted.org/packages/cf/a9/3616bc97c566d0d375dfcf362cbd5dcedebfe55cec1fb86585d1aa8bd463/hdf5plugin-1.4.1-py2.py3-none-any.whl
Collecting punx==0.2.2 (from -r /local/sandbox/condaenv.4drba0p0.requirements.txt (line 4))
  Using cached https://files.pythonhosted.org/packages/09/19/88730787573ed1056c9010a9e8ea660070239e766f093c9952d64c3bbe62/punx-0.2.2-py2.py3-none-any.whl
Collecting pyepics==3.3.2 (from -r /local/sandbox/condaenv.4drba0p0.requirements.txt (line 5))
Collecting pygithub==1.43.4 (from -r /local/sandbox/condaenv.4drba0p0.requirements.txt (line 6))
Collecting pyimm==1.0.7 (from -r /local/sandbox/condaenv.4drba0p0.requirements.txt (line 7))
Collecting pynx==2018.2.0 (from -r /local/sandbox/condaenv.4drba0p0.requirements.txt (line 8))

Pip subprocess error:
  Could not find a version that satisfies the requirement pynx==2018.2.0 (from -r /local/sandbox/condaenv.4drba0p0.requirements.txt (line 8)) (from versions: )
No matching distribution found for pynx==2018.2.0 (from -r /local/sandbox/condaenv.4drba0p0.requirements.txt (line 8))

CondaEnvException: Pip failed

We have a tarball for pynx so that one goes in "other".

(revised) But we can pip install from URL. Works for me. Worked before.

prjemian commented 4 years ago

grep " install " /APSshare/anaconda3/HISTORY.txt | grep -v /x86/

``` conda install -c conda-forge sparse pyepics pyRestTable conda install -c apsu epics-base conda install -c conda-forge sparse pyepics pyRestTable conda install -c lightsource2-tag epics-base conda install sparse pyepics conda install pyRestTable 2019-06-07: install icalendar on request conda install -c conda-forge icalendar conda install -c conda-forge icalendar conda install spec2nexus=2.1.0 conda install spec2nexus=2.1.0 conda install -c prjemian spec2nexus pyRestTable conda install -c prjemian spec2nexus 2019-01-25: install PyNX and its prerequisites, also PyGTK # conda install -c conda-forge silx fabio # pip install hdf5plugin # pip install http://ftp.esrf.fr/pub/scisoft/PyNX/pynx-2018.2.0.tar.bz2 # instead, install with pip pip install http://ftp.esrf.fr/pub/scisoft/PyNX/pynx-2018.2.0.tar.bz2 # conda install -c ska pygtk # install with pip now pip install PyGTK 2019-01-25: install h5py punx (and PyGitHub Deprecated) conda install h5py pip install punx 2019-01-21: install pyimm from PyPI per request from John Hammonds for XPCS ./x86_64/bin/pip install pyimm pip install pyepics 2019-01-03: install latest PyEpics pyRestTable spec2nexus ./x86_64/bin/pip install PyEpics pyRestTable ./x86_64/bin/pip install -U --no-deps spec2nexus 2018-12-21: install wxpython 4 ./x86_64/bin/conda install wxpython ./conda install --force conda=4.5.12 ./x86_64/bin/pip install --no-deps -U pyRestTable 2018-09-20: install Labjack Python tools on request, update punx (& PyGitHub, PyJWT, & Deprecated) pip install . conda install pyjwt pip install -U pygithub pip install -U punx 2018-07-10: install cython ./x86_64/bin/conda install cython ./x86_64/bin/pip install -U --no-deps punx ./x86_64/bin/conda install pytest-html pytest-metadata 2018-05-21: update conda pip anaconda, install pandoc for Marty Smith ./x86_64/bin/conda install pandoc 2018-02-28: install pyqtgraph for Chris Roehrig ./x86_64/bin/conda install pyqtgraph 2017-12-20: install parsl ./x86_64/bin/pip install parsl ./x86_64/bin/pip install -U bcdamenu ./x86_64/bin/pip install pytest-html ./x86_64/bin/pip install pymysql ./x86_64/bin/conda install spec2nexus -c prjemian 2017-08-08: install tqdm, peakutils & update pytest per user requests ./x86_64/bin/conda install tqdm ./x86_64/bin/pip install peakutils 2017-05-30: install xrayutilities, per request ./x86_64/bin/pip install xrayutilities ./x86_64/bin/pip install punx 2016-12-22: install PyGithub ./x86_64/bin/pip install PyGithub 2016-12-07: install punx 0.1.3 (from PyPI) ./x86_64/bin/pip install punx 2016-12-02: install custom ShadowOui in /APSshare/anaconda3/ShadowOui ./x86_64/bin/pip install PyEpics pyRestTable spec2nexus ./x86_64/bin/conda install -y pyqt=4 ```

prjemian commented 4 years ago

What about 2018-09-20: install Labjack Python tools on request? Need the details. See #9 where details are dredged from the vast email archive.

prjemian commented 4 years ago

Nothing installed here for LabJack. APS IT handled this on the one system for that beam line. See #9

prjemian commented 4 years ago

conda install --yes --file requirements.txt

prjemian commented 4 years ago

conda install -c conda-forge  -c apsu -c aps-anl-tag -c prjemian -c nexpy --file requirements-conda.txt

prjemian commented 4 years ago

requirements-conda.txt

``` anaconda cfunits coverage coveralls cython Deprecated elasticsearch epics-base fabio h5py icalendar nexpy pandoc PyGitHub PyJWT PyQT pyqtgraph pyRestTable pytest pytest-html pytest-metadata Qt silx sparse spec2nexus sphinx sphinx_rtd_theme tqdm wxpython ```

requirements-pip.txt

``` bcdamenu hdf5plugin http://ftp.esrf.fr/pub/scisoft/PyNX/pynx-2018.2.0.tar.bz2 parsl peakutils punx PyGTK pyepics pyimm xrayutilities ```

prjemian commented 4 years ago

pip install -r requirements-pip.txt

prjemian commented 4 years ago

see https://repo.continuum.io/archive/ (there is no downloadable marked latest)

wget https://repo.continuum.io/archive/Anaconda3-2019.07-Linux-x86_64.sh

prjemian commented 4 years ago

add PyMCA to requirements-conda.txt

prjemian commented 4 years ago

Practice installation:

console

``` (base) jemian@wow /local/sandbox $ wget https://repo.continuum.io/archive/Anaconda3-2019.07-Linux-x86_64.sh --2019-09-04 17:27:42-- https://repo.continuum.io/archive/Anaconda3-2019.07-Linux-x86_64.sh Resolving repo.continuum.io (repo.continuum.io)... 104.18.201.79, 104.18.200.79, 2606:4700::6812:c94f, ... Connecting to repo.continuum.io (repo.continuum.io)|104.18.201.79|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 541906131 (517M) [application/x-sh] Saving to: ‘Anaconda3-2019.07-Linux-x86_64.sh’ 100%[=============================================================================================>] 541,906,131 112MB/s in 4.6s 2019-09-04 17:27:47 (112 MB/s) - ‘Anaconda3-2019.07-Linux-x86_64.sh’ saved [541906131/541906131] (base) jemian@wow /local/sandbox $ conda deactivate jemian@wow /local/sandbox $ bash ./Anaconda3-2019.07-Linux-x86_64.sh Welcome to Anaconda3 2019.07 In order to continue the installation process, please review the license agreement. Please, press ENTER to continue >>> =================================== Anaconda End User License Agreement =================================== ... Do you accept the license terms? [yes|no] [no] >>> yes Anaconda3 will now be installed into this location: /home/oxygen/JEMIAN/anaconda3 - Press ENTER to confirm the location - Press CTRL-C to abort the installation - Or specify a different location below [/home/oxygen/JEMIAN/anaconda3] >>> /local/sandbox/anaconda3 PREFIX=/local/sandbox/anaconda3 Unpacking payload ... Collecting package metadata (current_repodata.json): done Solving environment: done ## Package Plan ## environment location: /local/sandbox/anaconda3 added / updated specs: - _ipyw_jlab_nb_ext_conf==0.1.0=py37_0 - _libgcc_mutex==0.1=main - alabaster==0.7.12=py37_0 - anaconda-client==1.7.2=py37_0 - anaconda-navigator==1.9.7=py37_0 - anaconda-project==0.8.3=py_0 - anaconda==2019.07=py37_0 - asn1crypto==0.24.0=py37_0 - astroid==2.2.5=py37_0 - astropy==3.2.1=py37h7b6447c_0 - atomicwrites==1.3.0=py37_1 - attrs==19.1.0=py37_1 - babel==2.7.0=py_0 - backcall==0.1.0=py37_0 - backports.functools_lru_cache==1.5=py_2 - backports.os==0.1.1=py37_0 - backports.shutil_get_terminal_size==1.0.0=py37_2 - backports.tempfile==1.0=py_1 - backports.weakref==1.0.post1=py_1 - backports==1.0=py_2 - beautifulsoup4==4.7.1=py37_1 - bitarray==0.9.3=py37h7b6447c_0 - bkcharts==0.2=py37_0 - blas==1.0=mkl - bleach==3.1.0=py37_0 - blosc==1.16.3=hd408876_0 - bokeh==1.2.0=py37_0 - boto==2.49.0=py37_0 - bottleneck==1.2.1=py37h035aef0_1 - bzip2==1.0.8=h7b6447c_0 - ca-certificates==2019.5.15=0 - cairo==1.14.12=h8948797_3 - certifi==2019.6.16=py37_0 - cffi==1.12.3=py37h2e261b9_0 - chardet==3.0.4=py37_1 - click==7.0=py37_0 - cloudpickle==1.2.1=py_0 - clyent==1.2.2=py37_1 - colorama==0.4.1=py37_0 - conda-build==3.18.8=py37_0 - conda-env==2.6.0=1 - conda-package-handling==1.3.11=py37_0 - conda-verify==3.4.2=py_1 - conda==4.7.10=py37_0 - contextlib2==0.5.5=py37_0 - cryptography==2.7=py37h1ba5d50_0 - curl==7.65.2=hbc83047_0 - cycler==0.10.0=py37_0 - cython==0.29.12=py37he6710b0_0 - cytoolz==0.10.0=py37h7b6447c_0 - dask-core==2.1.0=py_0 - dask==2.1.0=py_0 - dbus==1.13.6=h746ee38_0 - decorator==4.4.0=py37_1 - defusedxml==0.6.0=py_0 - distributed==2.1.0=py_0 - docutils==0.14=py37_0 - entrypoints==0.3=py37_0 - et_xmlfile==1.0.1=py37_0 - expat==2.2.6=he6710b0_0 - fastcache==1.1.0=py37h7b6447c_0 - filelock==3.0.12=py_0 - flask==1.1.1=py_0 - fontconfig==2.13.0=h9420a91_0 - freetype==2.9.1=h8a8886c_1 - fribidi==1.0.5=h7b6447c_0 - future==0.17.1=py37_0 - get_terminal_size==1.0.0=haa9412d_0 - gevent==1.4.0=py37h7b6447c_0 - glib==2.56.2=hd408876_0 - glob2==0.7=py_0 - gmp==6.1.2=h6c8ec71_1 - gmpy2==2.0.8=py37h10f8cd9_2 - graphite2==1.3.13=h23475e2_0 - greenlet==0.4.15=py37h7b6447c_0 - gst-plugins-base==1.14.0=hbbd80ab_1 - gstreamer==1.14.0=hb453b48_1 - h5py==2.9.0=py37h7918eee_0 - harfbuzz==1.8.8=hffaf4a1_0 - hdf5==1.10.4=hb1b8bf9_0 - heapdict==1.0.0=py37_2 - html5lib==1.0.1=py37_0 - icu==58.2=h9c2bf20_1 - idna==2.8=py37_0 - imageio==2.5.0=py37_0 - imagesize==1.1.0=py37_0 - importlib_metadata==0.17=py37_1 - intel-openmp==2019.4=243 - ipykernel==5.1.1=py37h39e3cac_0 - ipython==7.6.1=py37h39e3cac_0 - ipython_genutils==0.2.0=py37_0 - ipywidgets==7.5.0=py_0 - isort==4.3.21=py37_0 - itsdangerous==1.1.0=py37_0 - jbig==2.1=hdba287a_0 - jdcal==1.4.1=py_0 - jedi==0.13.3=py37_0 - jeepney==0.4=py37_0 - jinja2==2.10.1=py37_0 - joblib==0.13.2=py37_0 - jpeg==9b=h024ee3a_2 - json5==0.8.4=py_0 - jsonschema==3.0.1=py37_0 - jupyter==1.0.0=py37_7 - jupyter_client==5.3.1=py_0 - jupyter_console==6.0.0=py37_0 - jupyter_core==4.5.0=py_0 - jupyterlab==1.0.2=py37hf63ae98_0 - jupyterlab_server==1.0.0=py_0 - keyring==18.0.0=py37_0 - kiwisolver==1.1.0=py37he6710b0_0 - krb5==1.16.1=h173b8e3_7 - lazy-object-proxy==1.4.1=py37h7b6447c_0 - libarchive==3.3.3=h5d8350f_5 - libcurl==7.65.2=h20c2e04_0 - libedit==3.1.20181209=hc058e9b_0 - libffi==3.2.1=hd88cf55_4 - libgcc-ng==9.1.0=hdf63c60_0 - libgfortran-ng==7.3.0=hdf63c60_0 - liblief==0.9.0=h7725739_2 - libpng==1.6.37=hbc83047_0 - libsodium==1.0.16=h1bed415_0 - libssh2==1.8.2=h1ba5d50_0 - libstdcxx-ng==9.1.0=hdf63c60_0 - libtiff==4.0.10=h2733197_2 - libtool==2.4.6=h7b6447c_5 - libuuid==1.0.3=h1bed415_2 - libxcb==1.13=h1bed415_1 - libxml2==2.9.9=hea5a465_1 - libxslt==1.1.33=h7d1a2b0_0 - llvmlite==0.29.0=py37hd408876_0 - locket==0.2.0=py37_1 - lxml==4.3.4=py37hefd8a0e_0 - lz4-c==1.8.1.2=h14c3975_0 - lzo==2.10=h49e0be7_2 - markupsafe==1.1.1=py37h7b6447c_0 - matplotlib==3.1.0=py37h5429711_0 - mccabe==0.6.1=py37_1 - mistune==0.8.4=py37h7b6447c_0 - mkl-service==2.0.2=py37h7b6447c_0 - mkl==2019.4=243 - mkl_fft==1.0.12=py37ha843d7b_0 - mkl_random==1.0.2=py37hd81dba3_0 - mock==3.0.5=py37_0 - more-itertools==7.0.0=py37_0 - mpc==1.1.0=h10f8cd9_1 - mpfr==4.0.1=hdf1c602_3 - mpmath==1.1.0=py37_0 - msgpack-python==0.6.1=py37hfd86e86_1 - multipledispatch==0.6.0=py37_0 - navigator-updater==0.2.1=py37_0 - nbconvert==5.5.0=py_0 - nbformat==4.4.0=py37_0 - ncurses==6.1=he6710b0_1 - networkx==2.3=py_0 - nltk==3.4.4=py37_0 - nose==1.3.7=py37_2 - notebook==6.0.0=py37_0 - numba==0.44.1=py37h962f231_0 - numexpr==2.6.9=py37h9e4a6bb_0 - numpy-base==1.16.4=py37hde5b4d6_0 - numpy==1.16.4=py37h7e9f1db_0 - numpydoc==0.9.1=py_0 - olefile==0.46=py37_0 - openpyxl==2.6.2=py_0 - openssl==1.1.1c=h7b6447c_1 - packaging==19.0=py37_0 - pandas==0.24.2=py37he6710b0_0 - pandoc==2.2.3.2=0 - pandocfilters==1.4.2=py37_1 - pango==1.42.4=h049681c_0 - parso==0.5.0=py_0 - partd==1.0.0=py_0 - patchelf==0.9=he6710b0_3 - path.py==12.0.1=py_0 - pathlib2==2.3.4=py37_0 - patsy==0.5.1=py37_0 - pcre==8.43=he6710b0_0 - pep8==1.7.1=py37_0 - pexpect==4.7.0=py37_0 - pickleshare==0.7.5=py37_0 - pillow==6.1.0=py37h34e0f95_0 - pip==19.1.1=py37_0 - pixman==0.38.0=h7b6447c_0 - pkginfo==1.5.0.1=py37_0 - pluggy==0.12.0=py_0 - ply==3.11=py37_0 - prometheus_client==0.7.1=py_0 - prompt_toolkit==2.0.9=py37_0 - psutil==5.6.3=py37h7b6447c_0 - ptyprocess==0.6.0=py37_0 - py-lief==0.9.0=py37h7725739_2 - py==1.8.0=py37_0 - pycodestyle==2.5.0=py37_0 - pycosat==0.6.3=py37h14c3975_0 - pycparser==2.19=py37_0 - pycrypto==2.6.1=py37h14c3975_9 - pycurl==7.43.0.3=py37h1ba5d50_0 - pyflakes==2.1.1=py37_0 - pygments==2.4.2=py_0 - pylint==2.3.1=py37_0 - pyodbc==4.0.26=py37he6710b0_0 - pyopenssl==19.0.0=py37_0 - pyparsing==2.4.0=py_0 - pyqt==5.9.2=py37h05f1152_2 - pyrsistent==0.14.11=py37h7b6447c_0 - pysocks==1.7.0=py37_0 - pytables==3.5.2=py37h71ec239_1 - pytest-arraydiff==0.3=py37h39e3cac_0 - pytest-astropy==0.5.0=py37_0 - pytest-doctestplus==0.3.0=py37_0 - pytest-openfiles==0.3.2=py37_0 - pytest-remotedata==0.3.1=py37_0 - pytest==5.0.1=py37_0 - python-dateutil==2.8.0=py37_0 - python-libarchive-c==2.8=py37_11 - python==3.7.3=h0371630_0 - pytz==2019.1=py_0 - pywavelets==1.0.3=py37hdd07704_1 - pyyaml==5.1.1=py37h7b6447c_0 - pyzmq==18.0.0=py37he6710b0_0 - qt==5.9.7=h5867ecd_1 - qtawesome==0.5.7=py37_1 - qtconsole==4.5.1=py_0 - qtpy==1.8.0=py_0 - readline==7.0=h7b6447c_5 - requests==2.22.0=py37_0 - rope==0.14.0=py_0 - ruamel_yaml==0.15.46=py37h14c3975_0 - scikit-image==0.15.0=py37he6710b0_0 - scikit-learn==0.21.2=py37hd81dba3_0 - scipy==1.3.0=py37h7c811a0_0 - seaborn==0.9.0=py37_0 - secretstorage==3.1.1=py37_0 - send2trash==1.5.0=py37_0 - setuptools==41.0.1=py37_0 - simplegeneric==0.8.1=py37_2 - singledispatch==3.4.0.3=py37_0 - sip==4.19.8=py37hf484d3e_0 - six==1.12.0=py37_0 - snappy==1.1.7=hbae5bb6_3 - snowballstemmer==1.9.0=py_0 - sortedcollections==1.1.2=py37_0 - sortedcontainers==2.1.0=py37_0 - soupsieve==1.8=py37_0 - sphinx==2.1.2=py_0 - sphinxcontrib-applehelp==1.0.1=py_0 - sphinxcontrib-devhelp==1.0.1=py_0 - sphinxcontrib-htmlhelp==1.0.2=py_0 - sphinxcontrib-jsmath==1.0.1=py_0 - sphinxcontrib-qthelp==1.0.2=py_0 - sphinxcontrib-serializinghtml==1.1.3=py_0 - sphinxcontrib-websupport==1.1.2=py_0 - sphinxcontrib==1.0=py37_1 - spyder-kernels==0.5.1=py37_0 - spyder==3.3.6=py37_0 - sqlalchemy==1.3.5=py37h7b6447c_0 - sqlite==3.29.0=h7b6447c_0 - statsmodels==0.10.0=py37hdd07704_0 - sympy==1.4=py37_0 - tblib==1.4.0=py_0 - terminado==0.8.2=py37_0 - testpath==0.4.2=py37_0 - tk==8.6.8=hbc83047_0 - toolz==0.10.0=py_0 - tornado==6.0.3=py37h7b6447c_0 - tqdm==4.32.1=py_0 - traitlets==4.3.2=py37_0 - unicodecsv==0.14.1=py37_0 - unixodbc==2.3.7=h14c3975_0 - urllib3==1.24.2=py37_0 - wcwidth==0.1.7=py37_0 - webencodings==0.5.1=py37_1 - werkzeug==0.15.4=py_0 - wheel==0.33.4=py37_0 - widgetsnbextension==3.5.0=py37_0 - wrapt==1.11.2=py37h7b6447c_0 - wurlitzer==1.0.2=py37_0 - xlrd==1.2.0=py37_0 - xlsxwriter==1.1.8=py_0 - xlwt==1.3.0=py37_0 - xz==5.2.4=h14c3975_4 - yaml==0.1.7=had09818_2 - zeromq==4.3.1=he6710b0_3 - zict==1.0.0=py_0 - zipp==0.5.1=py_0 - zlib==1.2.11=h7b6447c_3 - zstd==1.3.7=h0b5b093_0 The following NEW packages will be INSTALLED: _ipyw_jlab_nb_ext~ pkgs/main/linux-64::_ipyw_jlab_nb_ext_conf-0.1.0-py37_0 _libgcc_mutex pkgs/main/linux-64::_libgcc_mutex-0.1-main alabaster pkgs/main/linux-64::alabaster-0.7.12-py37_0 anaconda pkgs/main/linux-64::anaconda-2019.07-py37_0 anaconda-client pkgs/main/linux-64::anaconda-client-1.7.2-py37_0 anaconda-navigator pkgs/main/linux-64::anaconda-navigator-1.9.7-py37_0 anaconda-project pkgs/main/noarch::anaconda-project-0.8.3-py_0 asn1crypto pkgs/main/linux-64::asn1crypto-0.24.0-py37_0 astroid pkgs/main/linux-64::astroid-2.2.5-py37_0 astropy pkgs/main/linux-64::astropy-3.2.1-py37h7b6447c_0 atomicwrites pkgs/main/linux-64::atomicwrites-1.3.0-py37_1 attrs pkgs/main/linux-64::attrs-19.1.0-py37_1 babel pkgs/main/noarch::babel-2.7.0-py_0 backcall pkgs/main/linux-64::backcall-0.1.0-py37_0 backports pkgs/main/noarch::backports-1.0-py_2 backports.functoo~ pkgs/main/noarch::backports.functools_lru_cache-1.5-py_2 backports.os pkgs/main/linux-64::backports.os-0.1.1-py37_0 backports.shutil_~ pkgs/main/linux-64::backports.shutil_get_terminal_size-1.0.0-py37_2 backports.tempfile pkgs/main/noarch::backports.tempfile-1.0-py_1 backports.weakref pkgs/main/noarch::backports.weakref-1.0.post1-py_1 beautifulsoup4 pkgs/main/linux-64::beautifulsoup4-4.7.1-py37_1 bitarray pkgs/main/linux-64::bitarray-0.9.3-py37h7b6447c_0 bkcharts pkgs/main/linux-64::bkcharts-0.2-py37_0 blas pkgs/main/linux-64::blas-1.0-mkl bleach pkgs/main/linux-64::bleach-3.1.0-py37_0 blosc pkgs/main/linux-64::blosc-1.16.3-hd408876_0 bokeh pkgs/main/linux-64::bokeh-1.2.0-py37_0 boto pkgs/main/linux-64::boto-2.49.0-py37_0 bottleneck pkgs/main/linux-64::bottleneck-1.2.1-py37h035aef0_1 bzip2 pkgs/main/linux-64::bzip2-1.0.8-h7b6447c_0 ca-certificates pkgs/main/linux-64::ca-certificates-2019.5.15-0 cairo pkgs/main/linux-64::cairo-1.14.12-h8948797_3 certifi pkgs/main/linux-64::certifi-2019.6.16-py37_0 cffi pkgs/main/linux-64::cffi-1.12.3-py37h2e261b9_0 chardet pkgs/main/linux-64::chardet-3.0.4-py37_1 click pkgs/main/linux-64::click-7.0-py37_0 cloudpickle pkgs/main/noarch::cloudpickle-1.2.1-py_0 clyent pkgs/main/linux-64::clyent-1.2.2-py37_1 colorama pkgs/main/linux-64::colorama-0.4.1-py37_0 conda pkgs/main/linux-64::conda-4.7.10-py37_0 conda-build pkgs/main/linux-64::conda-build-3.18.8-py37_0 conda-env pkgs/main/linux-64::conda-env-2.6.0-1 conda-package-han~ pkgs/main/linux-64::conda-package-handling-1.3.11-py37_0 conda-verify pkgs/main/noarch::conda-verify-3.4.2-py_1 contextlib2 pkgs/main/linux-64::contextlib2-0.5.5-py37_0 cryptography pkgs/main/linux-64::cryptography-2.7-py37h1ba5d50_0 curl pkgs/main/linux-64::curl-7.65.2-hbc83047_0 cycler pkgs/main/linux-64::cycler-0.10.0-py37_0 cython pkgs/main/linux-64::cython-0.29.12-py37he6710b0_0 cytoolz pkgs/main/linux-64::cytoolz-0.10.0-py37h7b6447c_0 dask pkgs/main/noarch::dask-2.1.0-py_0 dask-core pkgs/main/noarch::dask-core-2.1.0-py_0 dbus pkgs/main/linux-64::dbus-1.13.6-h746ee38_0 decorator pkgs/main/linux-64::decorator-4.4.0-py37_1 defusedxml pkgs/main/noarch::defusedxml-0.6.0-py_0 distributed pkgs/main/noarch::distributed-2.1.0-py_0 docutils pkgs/main/linux-64::docutils-0.14-py37_0 entrypoints pkgs/main/linux-64::entrypoints-0.3-py37_0 et_xmlfile pkgs/main/linux-64::et_xmlfile-1.0.1-py37_0 expat pkgs/main/linux-64::expat-2.2.6-he6710b0_0 fastcache pkgs/main/linux-64::fastcache-1.1.0-py37h7b6447c_0 filelock pkgs/main/noarch::filelock-3.0.12-py_0 flask pkgs/main/noarch::flask-1.1.1-py_0 fontconfig pkgs/main/linux-64::fontconfig-2.13.0-h9420a91_0 freetype pkgs/main/linux-64::freetype-2.9.1-h8a8886c_1 fribidi pkgs/main/linux-64::fribidi-1.0.5-h7b6447c_0 future pkgs/main/linux-64::future-0.17.1-py37_0 get_terminal_size pkgs/main/linux-64::get_terminal_size-1.0.0-haa9412d_0 gevent pkgs/main/linux-64::gevent-1.4.0-py37h7b6447c_0 glib pkgs/main/linux-64::glib-2.56.2-hd408876_0 glob2 pkgs/main/noarch::glob2-0.7-py_0 gmp pkgs/main/linux-64::gmp-6.1.2-h6c8ec71_1 gmpy2 pkgs/main/linux-64::gmpy2-2.0.8-py37h10f8cd9_2 graphite2 pkgs/main/linux-64::graphite2-1.3.13-h23475e2_0 greenlet pkgs/main/linux-64::greenlet-0.4.15-py37h7b6447c_0 gst-plugins-base pkgs/main/linux-64::gst-plugins-base-1.14.0-hbbd80ab_1 gstreamer pkgs/main/linux-64::gstreamer-1.14.0-hb453b48_1 h5py pkgs/main/linux-64::h5py-2.9.0-py37h7918eee_0 harfbuzz pkgs/main/linux-64::harfbuzz-1.8.8-hffaf4a1_0 hdf5 pkgs/main/linux-64::hdf5-1.10.4-hb1b8bf9_0 heapdict pkgs/main/linux-64::heapdict-1.0.0-py37_2 html5lib pkgs/main/linux-64::html5lib-1.0.1-py37_0 icu pkgs/main/linux-64::icu-58.2-h9c2bf20_1 idna pkgs/main/linux-64::idna-2.8-py37_0 imageio pkgs/main/linux-64::imageio-2.5.0-py37_0 imagesize pkgs/main/linux-64::imagesize-1.1.0-py37_0 importlib_metadata pkgs/main/linux-64::importlib_metadata-0.17-py37_1 intel-openmp pkgs/main/linux-64::intel-openmp-2019.4-243 ipykernel pkgs/main/linux-64::ipykernel-5.1.1-py37h39e3cac_0 ipython pkgs/main/linux-64::ipython-7.6.1-py37h39e3cac_0 ipython_genutils pkgs/main/linux-64::ipython_genutils-0.2.0-py37_0 ipywidgets pkgs/main/noarch::ipywidgets-7.5.0-py_0 isort pkgs/main/linux-64::isort-4.3.21-py37_0 itsdangerous pkgs/main/linux-64::itsdangerous-1.1.0-py37_0 jbig pkgs/main/linux-64::jbig-2.1-hdba287a_0 jdcal pkgs/main/noarch::jdcal-1.4.1-py_0 jedi pkgs/main/linux-64::jedi-0.13.3-py37_0 jeepney pkgs/main/linux-64::jeepney-0.4-py37_0 jinja2 pkgs/main/linux-64::jinja2-2.10.1-py37_0 joblib pkgs/main/linux-64::joblib-0.13.2-py37_0 jpeg pkgs/main/linux-64::jpeg-9b-h024ee3a_2 json5 pkgs/main/noarch::json5-0.8.4-py_0 jsonschema pkgs/main/linux-64::jsonschema-3.0.1-py37_0 jupyter pkgs/main/linux-64::jupyter-1.0.0-py37_7 jupyter_client pkgs/main/noarch::jupyter_client-5.3.1-py_0 jupyter_console pkgs/main/linux-64::jupyter_console-6.0.0-py37_0 jupyter_core pkgs/main/noarch::jupyter_core-4.5.0-py_0 jupyterlab pkgs/main/linux-64::jupyterlab-1.0.2-py37hf63ae98_0 jupyterlab_server pkgs/main/noarch::jupyterlab_server-1.0.0-py_0 keyring pkgs/main/linux-64::keyring-18.0.0-py37_0 kiwisolver pkgs/main/linux-64::kiwisolver-1.1.0-py37he6710b0_0 krb5 pkgs/main/linux-64::krb5-1.16.1-h173b8e3_7 lazy-object-proxy pkgs/main/linux-64::lazy-object-proxy-1.4.1-py37h7b6447c_0 libarchive pkgs/main/linux-64::libarchive-3.3.3-h5d8350f_5 libcurl pkgs/main/linux-64::libcurl-7.65.2-h20c2e04_0 libedit pkgs/main/linux-64::libedit-3.1.20181209-hc058e9b_0 libffi pkgs/main/linux-64::libffi-3.2.1-hd88cf55_4 libgcc-ng pkgs/main/linux-64::libgcc-ng-9.1.0-hdf63c60_0 libgfortran-ng pkgs/main/linux-64::libgfortran-ng-7.3.0-hdf63c60_0 liblief pkgs/main/linux-64::liblief-0.9.0-h7725739_2 libpng pkgs/main/linux-64::libpng-1.6.37-hbc83047_0 libsodium pkgs/main/linux-64::libsodium-1.0.16-h1bed415_0 libssh2 pkgs/main/linux-64::libssh2-1.8.2-h1ba5d50_0 libstdcxx-ng pkgs/main/linux-64::libstdcxx-ng-9.1.0-hdf63c60_0 libtiff pkgs/main/linux-64::libtiff-4.0.10-h2733197_2 libtool pkgs/main/linux-64::libtool-2.4.6-h7b6447c_5 libuuid pkgs/main/linux-64::libuuid-1.0.3-h1bed415_2 libxcb pkgs/main/linux-64::libxcb-1.13-h1bed415_1 libxml2 pkgs/main/linux-64::libxml2-2.9.9-hea5a465_1 libxslt pkgs/main/linux-64::libxslt-1.1.33-h7d1a2b0_0 llvmlite pkgs/main/linux-64::llvmlite-0.29.0-py37hd408876_0 locket pkgs/main/linux-64::locket-0.2.0-py37_1 lxml pkgs/main/linux-64::lxml-4.3.4-py37hefd8a0e_0 lz4-c pkgs/main/linux-64::lz4-c-1.8.1.2-h14c3975_0 lzo pkgs/main/linux-64::lzo-2.10-h49e0be7_2 markupsafe pkgs/main/linux-64::markupsafe-1.1.1-py37h7b6447c_0 matplotlib pkgs/main/linux-64::matplotlib-3.1.0-py37h5429711_0 mccabe pkgs/main/linux-64::mccabe-0.6.1-py37_1 mistune pkgs/main/linux-64::mistune-0.8.4-py37h7b6447c_0 mkl pkgs/main/linux-64::mkl-2019.4-243 mkl-service pkgs/main/linux-64::mkl-service-2.0.2-py37h7b6447c_0 mkl_fft pkgs/main/linux-64::mkl_fft-1.0.12-py37ha843d7b_0 mkl_random pkgs/main/linux-64::mkl_random-1.0.2-py37hd81dba3_0 mock pkgs/main/linux-64::mock-3.0.5-py37_0 more-itertools pkgs/main/linux-64::more-itertools-7.0.0-py37_0 mpc pkgs/main/linux-64::mpc-1.1.0-h10f8cd9_1 mpfr pkgs/main/linux-64::mpfr-4.0.1-hdf1c602_3 mpmath pkgs/main/linux-64::mpmath-1.1.0-py37_0 msgpack-python pkgs/main/linux-64::msgpack-python-0.6.1-py37hfd86e86_1 multipledispatch pkgs/main/linux-64::multipledispatch-0.6.0-py37_0 navigator-updater pkgs/main/linux-64::navigator-updater-0.2.1-py37_0 nbconvert pkgs/main/noarch::nbconvert-5.5.0-py_0 nbformat pkgs/main/linux-64::nbformat-4.4.0-py37_0 ncurses pkgs/main/linux-64::ncurses-6.1-he6710b0_1 networkx pkgs/main/noarch::networkx-2.3-py_0 nltk pkgs/main/linux-64::nltk-3.4.4-py37_0 nose pkgs/main/linux-64::nose-1.3.7-py37_2 notebook pkgs/main/linux-64::notebook-6.0.0-py37_0 numba pkgs/main/linux-64::numba-0.44.1-py37h962f231_0 numexpr pkgs/main/linux-64::numexpr-2.6.9-py37h9e4a6bb_0 numpy pkgs/main/linux-64::numpy-1.16.4-py37h7e9f1db_0 numpy-base pkgs/main/linux-64::numpy-base-1.16.4-py37hde5b4d6_0 numpydoc pkgs/main/noarch::numpydoc-0.9.1-py_0 olefile pkgs/main/linux-64::olefile-0.46-py37_0 openpyxl pkgs/main/noarch::openpyxl-2.6.2-py_0 openssl pkgs/main/linux-64::openssl-1.1.1c-h7b6447c_1 packaging pkgs/main/linux-64::packaging-19.0-py37_0 pandas pkgs/main/linux-64::pandas-0.24.2-py37he6710b0_0 pandoc pkgs/main/linux-64::pandoc-2.2.3.2-0 pandocfilters pkgs/main/linux-64::pandocfilters-1.4.2-py37_1 pango pkgs/main/linux-64::pango-1.42.4-h049681c_0 parso pkgs/main/noarch::parso-0.5.0-py_0 partd pkgs/main/noarch::partd-1.0.0-py_0 patchelf pkgs/main/linux-64::patchelf-0.9-he6710b0_3 path.py pkgs/main/noarch::path.py-12.0.1-py_0 pathlib2 pkgs/main/linux-64::pathlib2-2.3.4-py37_0 patsy pkgs/main/linux-64::patsy-0.5.1-py37_0 pcre pkgs/main/linux-64::pcre-8.43-he6710b0_0 pep8 pkgs/main/linux-64::pep8-1.7.1-py37_0 pexpect pkgs/main/linux-64::pexpect-4.7.0-py37_0 pickleshare pkgs/main/linux-64::pickleshare-0.7.5-py37_0 pillow pkgs/main/linux-64::pillow-6.1.0-py37h34e0f95_0 pip pkgs/main/linux-64::pip-19.1.1-py37_0 pixman pkgs/main/linux-64::pixman-0.38.0-h7b6447c_0 pkginfo pkgs/main/linux-64::pkginfo-1.5.0.1-py37_0 pluggy pkgs/main/noarch::pluggy-0.12.0-py_0 ply pkgs/main/linux-64::ply-3.11-py37_0 prometheus_client pkgs/main/noarch::prometheus_client-0.7.1-py_0 prompt_toolkit pkgs/main/linux-64::prompt_toolkit-2.0.9-py37_0 psutil pkgs/main/linux-64::psutil-5.6.3-py37h7b6447c_0 ptyprocess pkgs/main/linux-64::ptyprocess-0.6.0-py37_0 py pkgs/main/linux-64::py-1.8.0-py37_0 py-lief pkgs/main/linux-64::py-lief-0.9.0-py37h7725739_2 pycodestyle pkgs/main/linux-64::pycodestyle-2.5.0-py37_0 pycosat pkgs/main/linux-64::pycosat-0.6.3-py37h14c3975_0 pycparser pkgs/main/linux-64::pycparser-2.19-py37_0 pycrypto pkgs/main/linux-64::pycrypto-2.6.1-py37h14c3975_9 pycurl pkgs/main/linux-64::pycurl-7.43.0.3-py37h1ba5d50_0 pyflakes pkgs/main/linux-64::pyflakes-2.1.1-py37_0 pygments pkgs/main/noarch::pygments-2.4.2-py_0 pylint pkgs/main/linux-64::pylint-2.3.1-py37_0 pyodbc pkgs/main/linux-64::pyodbc-4.0.26-py37he6710b0_0 pyopenssl pkgs/main/linux-64::pyopenssl-19.0.0-py37_0 pyparsing pkgs/main/noarch::pyparsing-2.4.0-py_0 pyqt pkgs/main/linux-64::pyqt-5.9.2-py37h05f1152_2 pyrsistent pkgs/main/linux-64::pyrsistent-0.14.11-py37h7b6447c_0 pysocks pkgs/main/linux-64::pysocks-1.7.0-py37_0 pytables pkgs/main/linux-64::pytables-3.5.2-py37h71ec239_1 pytest pkgs/main/linux-64::pytest-5.0.1-py37_0 pytest-arraydiff pkgs/main/linux-64::pytest-arraydiff-0.3-py37h39e3cac_0 pytest-astropy pkgs/main/linux-64::pytest-astropy-0.5.0-py37_0 pytest-doctestplus pkgs/main/linux-64::pytest-doctestplus-0.3.0-py37_0 pytest-openfiles pkgs/main/linux-64::pytest-openfiles-0.3.2-py37_0 pytest-remotedata pkgs/main/linux-64::pytest-remotedata-0.3.1-py37_0 python pkgs/main/linux-64::python-3.7.3-h0371630_0 python-dateutil pkgs/main/linux-64::python-dateutil-2.8.0-py37_0 python-libarchive~ pkgs/main/linux-64::python-libarchive-c-2.8-py37_11 pytz pkgs/main/noarch::pytz-2019.1-py_0 pywavelets pkgs/main/linux-64::pywavelets-1.0.3-py37hdd07704_1 pyyaml pkgs/main/linux-64::pyyaml-5.1.1-py37h7b6447c_0 pyzmq pkgs/main/linux-64::pyzmq-18.0.0-py37he6710b0_0 qt pkgs/main/linux-64::qt-5.9.7-h5867ecd_1 qtawesome pkgs/main/linux-64::qtawesome-0.5.7-py37_1 qtconsole pkgs/main/noarch::qtconsole-4.5.1-py_0 qtpy pkgs/main/noarch::qtpy-1.8.0-py_0 readline pkgs/main/linux-64::readline-7.0-h7b6447c_5 requests pkgs/main/linux-64::requests-2.22.0-py37_0 rope pkgs/main/noarch::rope-0.14.0-py_0 ruamel_yaml pkgs/main/linux-64::ruamel_yaml-0.15.46-py37h14c3975_0 scikit-image pkgs/main/linux-64::scikit-image-0.15.0-py37he6710b0_0 scikit-learn pkgs/main/linux-64::scikit-learn-0.21.2-py37hd81dba3_0 scipy pkgs/main/linux-64::scipy-1.3.0-py37h7c811a0_0 seaborn pkgs/main/linux-64::seaborn-0.9.0-py37_0 secretstorage pkgs/main/linux-64::secretstorage-3.1.1-py37_0 send2trash pkgs/main/linux-64::send2trash-1.5.0-py37_0 setuptools pkgs/main/linux-64::setuptools-41.0.1-py37_0 simplegeneric pkgs/main/linux-64::simplegeneric-0.8.1-py37_2 singledispatch pkgs/main/linux-64::singledispatch-3.4.0.3-py37_0 sip pkgs/main/linux-64::sip-4.19.8-py37hf484d3e_0 six pkgs/main/linux-64::six-1.12.0-py37_0 snappy pkgs/main/linux-64::snappy-1.1.7-hbae5bb6_3 snowballstemmer pkgs/main/noarch::snowballstemmer-1.9.0-py_0 sortedcollections pkgs/main/linux-64::sortedcollections-1.1.2-py37_0 sortedcontainers pkgs/main/linux-64::sortedcontainers-2.1.0-py37_0 soupsieve pkgs/main/linux-64::soupsieve-1.8-py37_0 sphinx pkgs/main/noarch::sphinx-2.1.2-py_0 sphinxcontrib pkgs/main/linux-64::sphinxcontrib-1.0-py37_1 sphinxcontrib-app~ pkgs/main/noarch::sphinxcontrib-applehelp-1.0.1-py_0 sphinxcontrib-dev~ pkgs/main/noarch::sphinxcontrib-devhelp-1.0.1-py_0 sphinxcontrib-htm~ pkgs/main/noarch::sphinxcontrib-htmlhelp-1.0.2-py_0 sphinxcontrib-jsm~ pkgs/main/noarch::sphinxcontrib-jsmath-1.0.1-py_0 sphinxcontrib-qth~ pkgs/main/noarch::sphinxcontrib-qthelp-1.0.2-py_0 sphinxcontrib-ser~ pkgs/main/noarch::sphinxcontrib-serializinghtml-1.1.3-py_0 sphinxcontrib-web~ pkgs/main/noarch::sphinxcontrib-websupport-1.1.2-py_0 spyder pkgs/main/linux-64::spyder-3.3.6-py37_0 spyder-kernels pkgs/main/linux-64::spyder-kernels-0.5.1-py37_0 sqlalchemy pkgs/main/linux-64::sqlalchemy-1.3.5-py37h7b6447c_0 sqlite pkgs/main/linux-64::sqlite-3.29.0-h7b6447c_0 statsmodels pkgs/main/linux-64::statsmodels-0.10.0-py37hdd07704_0 sympy pkgs/main/linux-64::sympy-1.4-py37_0 tblib pkgs/main/noarch::tblib-1.4.0-py_0 terminado pkgs/main/linux-64::terminado-0.8.2-py37_0 testpath pkgs/main/linux-64::testpath-0.4.2-py37_0 tk pkgs/main/linux-64::tk-8.6.8-hbc83047_0 toolz pkgs/main/noarch::toolz-0.10.0-py_0 tornado pkgs/main/linux-64::tornado-6.0.3-py37h7b6447c_0 tqdm pkgs/main/noarch::tqdm-4.32.1-py_0 traitlets pkgs/main/linux-64::traitlets-4.3.2-py37_0 unicodecsv pkgs/main/linux-64::unicodecsv-0.14.1-py37_0 unixodbc pkgs/main/linux-64::unixodbc-2.3.7-h14c3975_0 urllib3 pkgs/main/linux-64::urllib3-1.24.2-py37_0 wcwidth pkgs/main/linux-64::wcwidth-0.1.7-py37_0 webencodings pkgs/main/linux-64::webencodings-0.5.1-py37_1 werkzeug pkgs/main/noarch::werkzeug-0.15.4-py_0 wheel pkgs/main/linux-64::wheel-0.33.4-py37_0 widgetsnbextension pkgs/main/linux-64::widgetsnbextension-3.5.0-py37_0 wrapt pkgs/main/linux-64::wrapt-1.11.2-py37h7b6447c_0 wurlitzer pkgs/main/linux-64::wurlitzer-1.0.2-py37_0 xlrd pkgs/main/linux-64::xlrd-1.2.0-py37_0 xlsxwriter pkgs/main/noarch::xlsxwriter-1.1.8-py_0 xlwt pkgs/main/linux-64::xlwt-1.3.0-py37_0 xz pkgs/main/linux-64::xz-5.2.4-h14c3975_4 yaml pkgs/main/linux-64::yaml-0.1.7-had09818_2 zeromq pkgs/main/linux-64::zeromq-4.3.1-he6710b0_3 zict pkgs/main/noarch::zict-1.0.0-py_0 zipp pkgs/main/noarch::zipp-0.5.1-py_0 zlib pkgs/main/linux-64::zlib-1.2.11-h7b6447c_3 zstd pkgs/main/linux-64::zstd-1.3.7-h0b5b093_0 Preparing transaction: done Executing transaction: done installation finished. Do you wish the installer to initialize Anaconda3 by running conda init? [yes|no] [no] >>> no You have chosen to not have conda modify your shell scripts at all. To activate conda's base environment in your current shell session: eval "$(/local/sandbox/anaconda3/bin/conda shell.YOUR_SHELL_NAME hook)" To install conda's shell functions for easier access, first activate, then: conda init If you'd prefer that conda's base environment not be activated on startup, set the auto_activate_base parameter to false: conda config --set auto_activate_base false Thank you for installing Anaconda3! =========================================================================== Anaconda and JetBrains are working together to bring you Anaconda-powered environments tightly integrated in the PyCharm IDE. PyCharm for Anaconda is available at: https://www.anaconda.com/pycharm jemian@wow /local/sandbox $ source ./anaconda3/bin/activate (base) jemian@wow /local/sandbox $ ll total 517M drwxr-xr-x 215 jemian aesbc 8.0K Sep 4 17:29 anaconda3/ -rw-r--r-- 1 jemian aesbc 517M Jul 25 09:59 Anaconda3-2019.07-Linux-x86_64.sh -rw-r--r-- 1 jemian aesbc 427 Sep 4 14:59 blockbeam_8idi.mac -rw-r--r-- 1 jemian aesbc 537 Sep 4 15:03 blockbeam_8idi.py -rw-r--r-- 1 jemian aesbc 9.5K Sep 4 15:58 export.yml -rw-r--r-- 1 jemian aesbc 343 Sep 4 15:03 suresh.py (base) jemian@wow /local/sandbox $ touch requirements-{conda,pip}.txt (base) jemian@wow /local/sandbox $ geany requirements-{conda,pip}.txt (base) jemian@wow /local/sandbox $ conda list anaconda # packages in environment at /local/sandbox/anaconda3: # # Name Version Build Channel anaconda 2019.07 py37_0 anaconda-client 1.7.2 py37_0 anaconda-navigator 1.9.7 py37_0 anaconda-project 0.8.3 py_0 (base) jemian@wow /local/sandbox $ conda install -c conda-forge -c apsu -c aps-anl-tag -c prjemian -c nexpy --file requirements-conda.txt CondaValueError: could not parse 'prjemian commented 6 hours ago' in: requirements-conda.txt (base) jemian@wow /local/sandbox $ conda install -c conda-forge -c apsu -c aps-anl-tag -c prjemian -c nexpy --file requirements-conda.txt CondaValueError: could not parse 'prjemian commented 6 hours ago' in: requirements-conda.txt (base) jemian@wow /local/sandbox $ conda install -c conda-forge -c apsu -c aps-anl-tag -c prjemian -c nexpy --file requirements-conda.txt Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists. <== current version: 4.7.10 latest version: 4.7.11 Please update conda by running $ conda update -n base -c defaults conda ## Package Plan ## environment location: /local/sandbox/anaconda3 added / updated specs: - anaconda - cfunits - coverage - coveralls - cython - deprecated - elasticsearch - epics-base - fabio - h5py - icalendar - nexpy - pandoc - pygithub - pyjwt - pymca - pyqt - pyqtgraph - pyresttable - pytest - pytest-html - pytest-metadata - qt - silx - sparse - spec2nexus - sphinx - sphinx_rtd_theme - tqdm - wxpython The following packages will be downloaded: package | build ---------------------------|----------------- _anaconda_depends-2019.03 | py37_0 6 KB anaconda-custom | py37_1 3 KB ansi2html-1.5.2 | py37_0 33 KB certifi-2019.6.16 | py37_1 149 KB conda-forge cftime-1.0.3.4 |py37hd352d35_1001 306 KB conda-forge cfunits-3.1.1 | py_0 31 KB conda-forge conda-4.7.11 | py37_0 3.0 MB conda-forge coverage-4.5.4 | py37h516909a_0 219 KB conda-forge coveralls-1.8.2 | py_0 12 KB conda-forge cython-0.29.13 | py37he1b5a44_0 2.2 MB conda-forge deprecated-1.2.6 | py_0 10 KB conda-forge elasticsearch-7.0.0 | py_0 57 KB conda-forge epics-base-3.15.6 | he1b5a44_0 15.9 MB conda-forge fabio-0.9.0 | py37hc1659b7_1 1.7 MB conda-forge fisx-1.1.7 | py37hb3f55d8_0 4.8 MB conda-forge h5py-2.9.0 |nompi_py37hcafd542_1103 1.2 MB conda-forge hdf4-4.2.13 | 0 969 KB conda-forge icalendar-4.0.3 | py_0 56 KB conda-forge libglu-9.0.0 | hf484d3e_1000 405 KB conda-forge libnetcdf-4.6.1 | h11d0813_2 833 KB mako-1.1.0 | py_0 57 KB conda-forge netcdf4-1.4.2 | py37h808af73_0 477 KB nexpy-0.11.0 | py37_0 612 KB nexpy nexusformat-0.4.20 | py37_0 90 KB nexpy pygithub-1.43.6 | py37_0 2.0 MB conda-forge pyjwt-1.7.1 | py_0 17 KB conda-forge pymca-5.5.1 | py37hc1659b7_0 8.5 MB conda-forge pyqt-5.9.2 | py37hcca6a23_2 5.7 MB conda-forge pyresttable-2020.0.2 | py_0 24 KB aps-anl-tag pytest-5.1.2 | py37_0 352 KB conda-forge pytest-html-1.22.0 | py_0 16 KB conda-forge pytest-metadata-1.8.0 | py_0 8 KB conda-forge silx-0.11.0 | py37hb3f55d8_0 9.6 MB conda-forge sparse-0.8.0 | py_0 44 KB conda-forge spec2nexus-2021.1.3 | h39e3cac_0 8.8 MB aps-anl-tag sphinx-2.2.0 | py_0 1.5 MB conda-forge tqdm-4.35.0 | py_0 42 KB conda-forge udunits2-2.2.27.6 | h4e0c4b3_1001 152 KB conda-forge wxpython-4.0.4 | py37hc99224d_0 16.1 MB ------------------------------------------------------------ Total: 85.8 MB The following NEW packages will be INSTALLED: _anaconda_depends pkgs/main/linux-64::_anaconda_depends-2019.03-py37_0 ansi2html pkgs/main/linux-64::ansi2html-1.5.2-py37_0 cftime conda-forge/linux-64::cftime-1.0.3.4-py37hd352d35_1001 cfunits conda-forge/noarch::cfunits-3.1.1-py_0 coverage conda-forge/linux-64::coverage-4.5.4-py37h516909a_0 coveralls conda-forge/noarch::coveralls-1.8.2-py_0 deprecated conda-forge/noarch::deprecated-1.2.6-py_0 docopt conda-forge/noarch::docopt-0.6.2-py_1 elasticsearch conda-forge/noarch::elasticsearch-7.0.0-py_0 epics-base conda-forge/linux-64::epics-base-3.15.6-he1b5a44_0 fabio conda-forge/linux-64::fabio-0.9.0-py37hc1659b7_1 fisx conda-forge/linux-64::fisx-1.1.7-py37hb3f55d8_0 gettext conda-forge/linux-64::gettext-0.19.8.1-hc5be6a0_1002 hdf4 conda-forge/linux-64::hdf4-4.2.13-0 icalendar conda-forge/noarch::icalendar-4.0.3-py_0 libglu conda-forge/linux-64::libglu-9.0.0-hf484d3e_1000 libnetcdf pkgs/main/linux-64::libnetcdf-4.6.1-h11d0813_2 mako conda-forge/noarch::mako-1.1.0-py_0 netcdf4 pkgs/main/linux-64::netcdf4-1.4.2-py37h808af73_0 nexpy nexpy/linux-64::nexpy-0.11.0-py37_0 nexusformat nexpy/linux-64::nexusformat-0.4.20-py37_0 pygithub conda-forge/linux-64::pygithub-1.43.6-py37_0 pyjwt conda-forge/noarch::pyjwt-1.7.1-py_0 pymca conda-forge/linux-64::pymca-5.5.1-py37hc1659b7_0 pyqtgraph conda-forge/noarch::pyqtgraph-0.10.0-py_5 pyresttable aps-anl-tag/noarch::pyresttable-2020.0.2-py_0 pytest-html conda-forge/noarch::pytest-html-1.22.0-py_0 pytest-metadata conda-forge/noarch::pytest-metadata-1.8.0-py_0 silx conda-forge/linux-64::silx-0.11.0-py37hb3f55d8_0 sparse conda-forge/noarch::sparse-0.8.0-py_0 spec2nexus aps-anl-tag/noarch::spec2nexus-2021.1.3-h39e3cac_0 sphinx_rtd_theme conda-forge/noarch::sphinx_rtd_theme-0.4.3-py_0 udunits2 conda-forge/linux-64::udunits2-2.2.27.6-h4e0c4b3_1001 wxpython pkgs/main/linux-64::wxpython-4.0.4-py37hc99224d_0 The following packages will be UPDATED: ca-certificates pkgs/main::ca-certificates-2019.5.15-0 --> conda-forge::ca-certificates-2019.6.16-hecc5488_0 certifi pkgs/main::certifi-2019.6.16-py37_0 --> conda-forge::certifi-2019.6.16-py37_1 conda pkgs/main::conda-4.7.10-py37_0 --> conda-forge::conda-4.7.11-py37_0 cython pkgs/main::cython-0.29.12-py37he6710b~ --> conda-forge::cython-0.29.13-py37he1b5a44_0 h5py pkgs/main::h5py-2.9.0-py37h7918eee_0 --> conda-forge::h5py-2.9.0-nompi_py37hcafd542_1103 numba pkgs/main::numba-0.44.1-py37h962f231_0 --> conda-forge::numba-0.45.1-py37hb3f55d8_0 pandoc pkgs/main::pandoc-2.2.3.2-0 --> conda-forge::pandoc-2.7.3-0 pytest pkgs/main::pytest-5.0.1-py37_0 --> conda-forge::pytest-5.1.2-py37_0 sphinx pkgs/main::sphinx-2.1.2-py_0 --> conda-forge::sphinx-2.2.0-py_0 tqdm pkgs/main::tqdm-4.32.1-py_0 --> conda-forge::tqdm-4.35.0-py_0 The following packages will be SUPERSEDED by a higher-priority channel: openssl pkgs/main::openssl-1.1.1c-h7b6447c_1 --> conda-forge::openssl-1.1.1c-h516909a_0 pyqt pkgs/main::pyqt-5.9.2-py37h05f1152_2 --> conda-forge::pyqt-5.9.2-py37hcca6a23_2 The following packages will be DOWNGRADED: anaconda 2019.07-py37_0 --> custom-py37_1 Proceed ([y]/n)? y Downloading and Extracting Packages deprecated-1.2.6 | 10 KB | ############################################################################################ | 100% tqdm-4.35.0 | 42 KB | ############################################################################################ | 100% conda-4.7.11 | 3.0 MB | ############################################################################################ | 100% pytest-html-1.22.0 | 16 KB | ############################################################################################ | 100% pygithub-1.43.6 | 2.0 MB | ############################################################################################ | 100% pyresttable-2020.0.2 | 24 KB | ############################################################################################ | 100% pyqt-5.9.2 | 5.7 MB | ############################################################################################ | 100% spec2nexus-2021.1.3 | 8.8 MB | ############################################################################################ | 100% cftime-1.0.3.4 | 306 KB | ############################################################################################ | 100% coverage-4.5.4 | 219 KB | ############################################################################################ | 100% certifi-2019.6.16 | 149 KB | ############################################################################################ | 100% ansi2html-1.5.2 | 33 KB | ############################################################################################ | 100% sparse-0.8.0 | 44 KB | ############################################################################################ | 100% libglu-9.0.0 | 405 KB | ############################################################################################ | 100% udunits2-2.2.27.6 | 152 KB | ############################################################################################ | 100% cython-0.29.13 | 2.2 MB | ############################################################################################ | 100% silx-0.11.0 | 9.6 MB | ############################################################################################ | 100% anaconda-custom | 3 KB | ############################################################################################ | 100% fabio-0.9.0 | 1.7 MB | ############################################################################################ | 100% fisx-1.1.7 | 4.8 MB | ############################################################################################ | 100% icalendar-4.0.3 | 56 KB | ############################################################################################ | 100% mako-1.1.0 | 57 KB | ############################################################################################ | 100% pyjwt-1.7.1 | 17 KB | ############################################################################################ | 100% epics-base-3.15.6 | 15.9 MB | ############################################################################################ | 100% h5py-2.9.0 | 1.2 MB | ############################################################################################ | 100% pytest-5.1.2 | 352 KB | ############################################################################################ | 100% coveralls-1.8.2 | 12 KB | ############################################################################################ | 100% netcdf4-1.4.2 | 477 KB | ############################################################################################ | 100% nexusformat-0.4.20 | 90 KB | ############################################################################################ | 100% _anaconda_depends-20 | 6 KB | ############################################################################################ | 100% wxpython-4.0.4 | 16.1 MB | ############################################################################################ | 100% pytest-metadata-1.8. | 8 KB | ############################################################################################ | 100% cfunits-3.1.1 | 31 KB | ############################################################################################ | 100% elasticsearch-7.0.0 | 57 KB | ############################################################################################ | 100% nexpy-0.11.0 | 612 KB | ############################################################################################ | 100% pymca-5.5.1 | 8.5 MB | ############################################################################################ | 100% libnetcdf-4.6.1 | 833 KB | ############################################################################################ | 100% sphinx-2.2.0 | 1.5 MB | ############################################################################################ | 100% hdf4-4.2.13 | 969 KB | ############################################################################################ | 100% Preparing transaction: done Verifying transaction: done Executing transaction: done (base) jemian@wow /local/sandbox $ pip install -r requirements-pip.txt Collecting http://ftp.esrf.fr/pub/scisoft/PyNX/pynx-2018.2.0.tar.bz2 (from -r requirements-pip.txt (line 3)) Downloading http://ftp.esrf.fr/pub/scisoft/PyNX/pynx-2018.2.0.tar.bz2 (10.8MB) |████████████████████████████████| 10.8MB 39.6MB/s Collecting bcdamenu (from -r requirements-pip.txt (line 1)) Downloading https://files.pythonhosted.org/packages/4e/0a/9100df76075af1af13780721e58e8edd064af9dc6a6c7889753f7b2f489d/BcdaMenu-2019.5.0-py2.py3-none-any.whl Collecting hdf5plugin (from -r requirements-pip.txt (line 2)) Using cached https://files.pythonhosted.org/packages/cf/a9/3616bc97c566d0d375dfcf362cbd5dcedebfe55cec1fb86585d1aa8bd463/hdf5plugin-1.4.1-py2.py3-none-any.whl Collecting parsl (from -r requirements-pip.txt (line 4)) Downloading https://files.pythonhosted.org/packages/e0/9b/8fd7e4237d60ba90670b96a1b09457faf67db6dcd1c27b91cc623fa6fefa/parsl-0.8.0-py3-none-any.whl (380kB) |████████████████████████████████| 389kB 18.3MB/s Collecting peakutils (from -r requirements-pip.txt (line 5)) Downloading https://files.pythonhosted.org/packages/2a/e0/a45948450946a87dae44d936ea7646d862e1014753c496468a05f20e95c5/PeakUtils-1.3.2.tar.gz Collecting punx (from -r requirements-pip.txt (line 6)) Using cached https://files.pythonhosted.org/packages/09/19/88730787573ed1056c9010a9e8ea660070239e766f093c9952d64c3bbe62/punx-0.2.2-py2.py3-none-any.whl Collecting PyGTK (from -r requirements-pip.txt (line 7)) Downloading https://files.pythonhosted.org/packages/7c/18/fa4f2de77500dd62a314fd845ff6e903ac2ce551164cb421c5750969f799/pygtk-2.24.0.tar.bz2 (2.4MB) |████████████████████████████████| 2.4MB 65.4MB/s ERROR: Complete output from command python setup.py egg_info: ERROR: ******************************************************************** * Building PyGTK using distutils is only supported on windows. * * To build PyGTK in a supported way, read the INSTALL file. * ******************************************************************** ---------------------------------------- ERROR: Command "python setup.py egg_info" failed with error code 1 in /tmp/pip-install-2h15ejxe/PyGTK/ (base) jemian@wow /local/sandbox $ ```

prjemian commented 4 years ago

remove PyGTK from requirements-pip.txt and repeat previous step:

console

``` (base) jemian@wow /local/sandbox $ pip install -r requirements-pip.txt Collecting http://ftp.esrf.fr/pub/scisoft/PyNX/pynx-2018.2.0.tar.bz2 (from -r requirements-pip.txt (line 3)) Downloading http://ftp.esrf.fr/pub/scisoft/PyNX/pynx-2018.2.0.tar.bz2 (10.8MB) || 10.8MB 32.7MB/s Collecting bcdamenu (from -r requirements-pip.txt (line 1)) Using cached https://files.pythonhosted.org/packages/4e/0a/9100df76075af1af13780721e58e8edd064af9dc6a6c7889753f7b2f489d/BcdaMenu-2019.5.0-py2.py3-none-any.whl Collecting hdf5plugin (from -r requirements-pip.txt (line 2)) Using cached https://files.pythonhosted.org/packages/cf/a9/3616bc97c566d0d375dfcf362cbd5dcedebfe55cec1fb86585d1aa8bd463/hdf5plugin-1.4.1-py2.py3-none-any.whl Collecting parsl (from -r requirements-pip.txt (line 4)) Using cached https://files.pythonhosted.org/packages/e0/9b/8fd7e4237d60ba90670b96a1b09457faf67db6dcd1c27b91cc623fa6fefa/parsl-0.8.0-py3-none-any.whl Collecting peakutils (from -r requirements-pip.txt (line 5)) Using cached https://files.pythonhosted.org/packages/2a/e0/a45948450946a87dae44d936ea7646d862e1014753c496468a05f20e95c5/PeakUtils-1.3.2.tar.gz Collecting punx (from -r requirements-pip.txt (line 6)) Using cached https://files.pythonhosted.org/packages/09/19/88730787573ed1056c9010a9e8ea660070239e766f093c9952d64c3bbe62/punx-0.2.2-py2.py3-none-any.whl Collecting pyepics (from -r requirements-pip.txt (line 7)) Collecting pyimm (from -r requirements-pip.txt (line 8)) Using cached https://files.pythonhosted.org/packages/17/94/895a552a58c6b77ab490213e8a2e69487a3bb7b4a5017a6c772a4ee1b067/pyimm-1.0.7.tar.gz Collecting xrayutilities (from -r requirements-pip.txt (line 9)) Downloading https://files.pythonhosted.org/packages/4e/f2/864f03386c8a4d1b26c8f39234f8cfd8d778252fb2144f9c95a3d41a6ad8/xrayutilities-1.5.2.tar.gz (14.8MB) || 14.8MB 19.5MB/s Requirement already satisfied: numpy>=1.5 in ./anaconda3/lib/python3.7/site-packages (from PyNX==2018.2.0->-r requirements-pip.txt (line 3)) (1.16.4) Requirement already satisfied: scipy>=0.17 in ./anaconda3/lib/python3.7/site-packages (from PyNX==2018.2.0->-r requirements-pip.txt (line 3)) (1.3.0) Requirement already satisfied: setuptools in ./anaconda3/lib/python3.7/site-packages (from PyNX==2018.2.0->-r requirements-pip.txt (line 3)) (41.0.1) Requirement already satisfied: cython in ./anaconda3/lib/python3.7/site-packages (from PyNX==2018.2.0->-r requirements-pip.txt (line 3)) (0.29.13) Requirement already satisfied: matplotlib in ./anaconda3/lib/python3.7/site-packages (from PyNX==2018.2.0->-r requirements-pip.txt (line 3)) (3.1.0) Requirement already satisfied: scikit-image in ./anaconda3/lib/python3.7/site-packages (from PyNX==2018.2.0->-r requirements-pip.txt (line 3)) (0.15.0) Requirement already satisfied: h5py in ./anaconda3/lib/python3.7/site-packages (from PyNX==2018.2.0->-r requirements-pip.txt (line 3)) (2.9.0) Requirement already satisfied: fabio in ./anaconda3/lib/python3.7/site-packages (from PyNX==2018.2.0->-r requirements-pip.txt (line 3)) (0.9.0) Requirement already satisfied: silx in ./anaconda3/lib/python3.7/site-packages (from PyNX==2018.2.0->-r requirements-pip.txt (line 3)) (0.11.0) Collecting ipyparallel (from parsl->-r requirements-pip.txt (line 4)) Downloading https://files.pythonhosted.org/packages/3f/82/aaa7a357845a98d4028f27c799f0d3bb2fe55fc1247c73dc712b4ae2344c/ipyparallel-6.2.4-py2.py3-none-any.whl (198kB) || 204kB 69.1MB/s Requirement already satisfied: tblib in ./anaconda3/lib/python3.7/site-packages (from parsl->-r requirements-pip.txt (line 4)) (1.4.0) Requirement already satisfied: requests in ./anaconda3/lib/python3.7/site-packages (from parsl->-r requirements-pip.txt (line 4)) (2.22.0) Requirement already satisfied: psutil in ./anaconda3/lib/python3.7/site-packages (from parsl->-r requirements-pip.txt (line 4)) (5.6.3) Collecting plotly (from parsl->-r requirements-pip.txt (line 4)) Downloading https://files.pythonhosted.org/packages/70/19/8437e22c84083a6d5d8a3c80f4edc73c9dcbb89261d07e6bd13b48752bbd/plotly-4.1.1-py2.py3-none-any.whl (7.1MB) || 7.1MB 80.3MB/s Collecting sqlalchemy==1.3.3 (from parsl->-r requirements-pip.txt (line 4)) Downloading https://files.pythonhosted.org/packages/2b/b2/e6f5c5efc68942edefaa924e8fbea0b32375baa434a511cbf6bb17769cf6/SQLAlchemy-1.3.3.tar.gz (5.9MB) || 5.9MB 78.8MB/s Collecting sqlalchemy-utils (from parsl->-r requirements-pip.txt (line 4)) Downloading https://files.pythonhosted.org/packages/45/61/3bdd2931e86253fa7df6445a26929fbcc9bc43ad6b27a10f991eb6ecde75/SQLAlchemy-Utils-0.34.2.tar.gz (129kB) || 133kB 72.7MB/s Requirement already satisfied: networkx in ./anaconda3/lib/python3.7/site-packages (from parsl->-r requirements-pip.txt (line 4)) (2.3) Requirement already satisfied: ipykernel in ./anaconda3/lib/python3.7/site-packages (from parsl->-r requirements-pip.txt (line 4)) (5.1.1) Collecting pydot (from parsl->-r requirements-pip.txt (line 4)) Downloading https://files.pythonhosted.org/packages/33/d1/b1479a770f66d962f545c2101630ce1d5592d90cb4f083d38862e93d16d2/pydot-1.4.1-py2.py3-none-any.whl Requirement already satisfied: Flask in ./anaconda3/lib/python3.7/site-packages (from parsl->-r requirements-pip.txt (line 4)) (1.1.1) Collecting typeguard (from parsl->-r requirements-pip.txt (line 4)) Downloading https://files.pythonhosted.org/packages/ff/da/cd3f8c8d30803f3f4850a8d47bed9269c92c022e9c792c18f911c9d0f278/typeguard-2.5.0-py3-none-any.whl Collecting python-daemon (from parsl->-r requirements-pip.txt (line 4)) Downloading https://files.pythonhosted.org/packages/e6/44/6734382d1beb8704137ec94589e7d173a415f3396e34d020fb6b6271c2ff/python_daemon-2.2.3-py2.py3-none-any.whl Collecting globus-sdk (from parsl->-r requirements-pip.txt (line 4)) Downloading https://files.pythonhosted.org/packages/be/c1/ccf8e8ebeb229887e6355e87e9cc9f07e06b1661b3c6e50311566bae9f28/globus_sdk-1.8.0-py2.py3-none-any.whl (74kB) || 81kB 5.2MB/s Collecting dill (from parsl->-r requirements-pip.txt (line 4)) Downloading https://files.pythonhosted.org/packages/39/7a/70803635c850e351257029089d38748516a280864c97cbc73087afef6d51/dill-0.3.0.tar.gz (151kB) || 153kB 99.2MB/s Requirement already satisfied: pyzmq>=17.1.2 in ./anaconda3/lib/python3.7/site-packages (from parsl->-r requirements-pip.txt (line 4)) (18.0.0) Collecting paramiko (from parsl->-r requirements-pip.txt (line 4)) Downloading https://files.pythonhosted.org/packages/4b/80/74dace9e48b0ef923633dfb5e48798f58a168e4734bca8ecfaf839ba051a/paramiko-2.6.0-py2.py3-none-any.whl (199kB) || 204kB 32.8MB/s Requirement already satisfied: pandas in ./anaconda3/lib/python3.7/site-packages (from parsl->-r requirements-pip.txt (line 4)) (0.24.2) Collecting flask-sqlalchemy (from parsl->-r requirements-pip.txt (line 4)) Downloading https://files.pythonhosted.org/packages/08/ca/582442cad71504a1514a2f053006c8bb128844133d6076a4df17117545fa/Flask_SQLAlchemy-2.4.0-py2.py3-none-any.whl Requirement already satisfied: lxml in ./anaconda3/lib/python3.7/site-packages (from punx->-r requirements-pip.txt (line 6)) (4.3.4) Requirement already satisfied: PyGithub>=1.32 in ./anaconda3/lib/python3.7/site-packages (from punx->-r requirements-pip.txt (line 6)) (1.43.6) Requirement already satisfied: pyRestTable in ./anaconda3/lib/python3.7/site-packages/pyRestTable-2020.0.2-py3.7.egg (from punx->-r requirements-pip.txt (line 6)) (2020.0.2) Requirement already satisfied: cycler>=0.10 in ./anaconda3/lib/python3.7/site-packages (from matplotlib->PyNX==2018.2.0->-r requirements-pip.txt (line 3)) (0.10.0) Requirement already satisfied: kiwisolver>=1.0.1 in ./anaconda3/lib/python3.7/site-packages (from matplotlib->PyNX==2018.2.0->-r requirements-pip.txt (line 3)) (1.1.0) Requirement already satisfied: pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.1 in ./anaconda3/lib/python3.7/site-packages (from matplotlib->PyNX==2018.2.0->-r requirements-pip.txt (line 3)) (2.4.0) Requirement already satisfied: python-dateutil>=2.1 in ./anaconda3/lib/python3.7/site-packages (from matplotlib->PyNX==2018.2.0->-r requirements-pip.txt (line 3)) (2.8.0) Requirement already satisfied: pillow>=4.3.0 in ./anaconda3/lib/python3.7/site-packages (from scikit-image->PyNX==2018.2.0->-r requirements-pip.txt (line 3)) (6.1.0) Requirement already satisfied: imageio>=2.0.1 in ./anaconda3/lib/python3.7/site-packages (from scikit-image->PyNX==2018.2.0->-r requirements-pip.txt (line 3)) (2.5.0) Requirement already satisfied: PyWavelets>=0.4.0 in ./anaconda3/lib/python3.7/site-packages (from scikit-image->PyNX==2018.2.0->-r requirements-pip.txt (line 3)) (1.0.3) Requirement already satisfied: six in ./anaconda3/lib/python3.7/site-packages (from h5py->PyNX==2018.2.0->-r requirements-pip.txt (line 3)) (1.12.0) Requirement already satisfied: traitlets>=4.3 in ./anaconda3/lib/python3.7/site-packages (from ipyparallel->parsl->-r requirements-pip.txt (line 4)) (4.3.2) Requirement already satisfied: decorator in ./anaconda3/lib/python3.7/site-packages (from ipyparallel->parsl->-r requirements-pip.txt (line 4)) (4.4.0) Requirement already satisfied: ipython>=4 in ./anaconda3/lib/python3.7/site-packages (from ipyparallel->parsl->-r requirements-pip.txt (line 4)) (7.6.1) Requirement already satisfied: jupyter-client in ./anaconda3/lib/python3.7/site-packages (from ipyparallel->parsl->-r requirements-pip.txt (line 4)) (5.3.1) Requirement already satisfied: tornado>=4 in ./anaconda3/lib/python3.7/site-packages (from ipyparallel->parsl->-r requirements-pip.txt (line 4)) (6.0.3) Requirement already satisfied: ipython-genutils in ./anaconda3/lib/python3.7/site-packages (from ipyparallel->parsl->-r requirements-pip.txt (line 4)) (0.2.0) Requirement already satisfied: idna<2.9,>=2.5 in ./anaconda3/lib/python3.7/site-packages (from requests->parsl->-r requirements-pip.txt (line 4)) (2.8) Requirement already satisfied: certifi>=2017.4.17 in ./anaconda3/lib/python3.7/site-packages (from requests->parsl->-r requirements-pip.txt (line 4)) (2019.6.16) Requirement already satisfied: chardet<3.1.0,>=3.0.2 in ./anaconda3/lib/python3.7/site-packages (from requests->parsl->-r requirements-pip.txt (line 4)) (3.0.4) Requirement already satisfied: urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 in ./anaconda3/lib/python3.7/site-packages (from requests->parsl->-r requirements-pip.txt (line 4)) (1.24.2) Collecting retrying>=1.3.3 (from plotly->parsl->-r requirements-pip.txt (line 4)) Downloading https://files.pythonhosted.org/packages/44/ef/beae4b4ef80902f22e3af073397f079c96969c69b2c7d52a57ea9ae61c9d/retrying-1.3.3.tar.gz Requirement already satisfied: click>=5.1 in ./anaconda3/lib/python3.7/site-packages (from Flask->parsl->-r requirements-pip.txt (line 4)) (7.0) Requirement already satisfied: Werkzeug>=0.15 in ./anaconda3/lib/python3.7/site-packages (from Flask->parsl->-r requirements-pip.txt (line 4)) (0.15.4) Requirement already satisfied: Jinja2>=2.10.1 in ./anaconda3/lib/python3.7/site-packages (from Flask->parsl->-r requirements-pip.txt (line 4)) (2.10.1) Requirement already satisfied: itsdangerous>=0.24 in ./anaconda3/lib/python3.7/site-packages (from Flask->parsl->-r requirements-pip.txt (line 4)) (1.1.0) Requirement already satisfied: docutils in ./anaconda3/lib/python3.7/site-packages (from python-daemon->parsl->-r requirements-pip.txt (line 4)) (0.14) Collecting lockfile>=0.10 (from python-daemon->parsl->-r requirements-pip.txt (line 4)) Downloading https://files.pythonhosted.org/packages/c8/22/9460e311f340cb62d26a38c419b1381b8593b0bb6b5d1f056938b086d362/lockfile-0.12.2-py2.py3-none-any.whl Requirement already satisfied: pyjwt[crypto]<2.0.0,>=1.5.3 in ./anaconda3/lib/python3.7/site-packages (from globus-sdk->parsl->-r requirements-pip.txt (line 4)) (1.7.1) Collecting pynacl>=1.0.1 (from paramiko->parsl->-r requirements-pip.txt (line 4)) Downloading https://files.pythonhosted.org/packages/27/15/2cd0a203f318c2240b42cd9dd13c931ddd61067809fee3479f44f086103e/PyNaCl-1.3.0-cp34-abi3-manylinux1_x86_64.whl (759kB) || 768kB 92.1MB/s Requirement already satisfied: cryptography>=2.5 in ./anaconda3/lib/python3.7/site-packages (from paramiko->parsl->-r requirements-pip.txt (line 4)) (2.7) Collecting bcrypt>=3.1.3 (from paramiko->parsl->-r requirements-pip.txt (line 4)) Downloading https://files.pythonhosted.org/packages/8b/1d/82826443777dd4a624e38a08957b975e75df859b381ae302cfd7a30783ed/bcrypt-3.1.7-cp34-abi3-manylinux1_x86_64.whl (56kB) || 61kB 4.3MB/s Requirement already satisfied: pytz>=2011k in ./anaconda3/lib/python3.7/site-packages (from pandas->parsl->-r requirements-pip.txt (line 4)) (2019.1) Requirement already satisfied: deprecated in ./anaconda3/lib/python3.7/site-packages (from PyGithub>=1.32->punx->-r requirements-pip.txt (line 6)) (1.2.6) Requirement already satisfied: prompt-toolkit<2.1.0,>=2.0.0 in ./anaconda3/lib/python3.7/site-packages (from ipython>=4->ipyparallel->parsl->-r requirements-pip.txt (line 4)) (2.0.9) Requirement already satisfied: jedi>=0.10 in ./anaconda3/lib/python3.7/site-packages (from ipython>=4->ipyparallel->parsl->-r requirements-pip.txt (line 4)) (0.13.3) Requirement already satisfied: pygments in ./anaconda3/lib/python3.7/site-packages (from ipython>=4->ipyparallel->parsl->-r requirements-pip.txt (line 4)) (2.4.2) Requirement already satisfied: pexpect; sys_platform != "win32" in ./anaconda3/lib/python3.7/site-packages (from ipython>=4->ipyparallel->parsl->-r requirements-pip.txt (line 4)) (4.7.0) Requirement already satisfied: pickleshare in ./anaconda3/lib/python3.7/site-packages (from ipython>=4->ipyparallel->parsl->-r requirements-pip.txt (line 4)) (0.7.5) Requirement already satisfied: backcall in ./anaconda3/lib/python3.7/site-packages (from ipython>=4->ipyparallel->parsl->-r requirements-pip.txt (line 4)) (0.1.0) Requirement already satisfied: jupyter-core in ./anaconda3/lib/python3.7/site-packages (from jupyter-client->ipyparallel->parsl->-r requirements-pip.txt (line 4)) (4.5.0) Requirement already satisfied: MarkupSafe>=0.23 in ./anaconda3/lib/python3.7/site-packages (from Jinja2>=2.10.1->Flask->parsl->-r requirements-pip.txt (line 4)) (1.1.1) Requirement already satisfied: cffi>=1.4.1 in ./anaconda3/lib/python3.7/site-packages (from pynacl>=1.0.1->paramiko->parsl->-r requirements-pip.txt (line 4)) (1.12.3) Requirement already satisfied: asn1crypto>=0.21.0 in ./anaconda3/lib/python3.7/site-packages (from cryptography>=2.5->paramiko->parsl->-r requirements-pip.txt (line 4)) (0.24.0) Requirement already satisfied: wrapt<2,>=1.10 in ./anaconda3/lib/python3.7/site-packages (from deprecated->PyGithub>=1.32->punx->-r requirements-pip.txt (line 6)) (1.11.2) Requirement already satisfied: wcwidth in ./anaconda3/lib/python3.7/site-packages (from prompt-toolkit<2.1.0,>=2.0.0->ipython>=4->ipyparallel->parsl->-r requirements-pip.txt (line 4)) (0.1.7) Requirement already satisfied: parso>=0.3.0 in ./anaconda3/lib/python3.7/site-packages (from jedi>=0.10->ipython>=4->ipyparallel->parsl->-r requirements-pip.txt (line 4)) (0.5.0) Requirement already satisfied: ptyprocess>=0.5 in ./anaconda3/lib/python3.7/site-packages (from pexpect; sys_platform != "win32"->ipython>=4->ipyparallel->parsl->-r requirements-pip.txt (line 4)) (0.6.0) Requirement already satisfied: pycparser in ./anaconda3/lib/python3.7/site-packages (from cffi>=1.4.1->pynacl>=1.0.1->paramiko->parsl->-r requirements-pip.txt (line 4)) (2.19) Building wheels for collected packages: peakutils, pyimm, xrayutilities, PyNX, sqlalchemy, sqlalchemy-utils, dill, retrying Building wheel for peakutils (setup.py) ... done Stored in directory: /home/oxygen/JEMIAN/.cache/pip/wheels/6d/52/9c/94cff100c9dd4ec0c72762947b8d5da6f6c0762cd5312b04ec Building wheel for pyimm (setup.py) ... done Stored in directory: /home/oxygen/JEMIAN/.cache/pip/wheels/d3/c1/aa/3af31aa9463720646536fd0de57ffd9ac2176f41aeef7f7ef4 Building wheel for xrayutilities (setup.py) ... done Stored in directory: /home/oxygen/JEMIAN/.cache/pip/wheels/77/af/5a/e8fd9851c470d61d944b2030e7f29002c68088ca166de826a5 Building wheel for PyNX (setup.py) ... done Stored in directory: /home/oxygen/JEMIAN/.cache/pip/wheels/8c/a7/34/e2323f1d05fc80c7dc1c50c99df3839be944b23543ce8ab9ef Building wheel for sqlalchemy (setup.py) ... done Stored in directory: /home/oxygen/JEMIAN/.cache/pip/wheels/6b/02/e3/7f1149be63131cdf6aaaa3330924a2683bb530188940569d66 Building wheel for sqlalchemy-utils (setup.py) ... done Stored in directory: /home/oxygen/JEMIAN/.cache/pip/wheels/74/73/55/6d2e33ae4013e904a81b7458a50732134b45956d923a050999 Building wheel for dill (setup.py) ... done Stored in directory: /home/oxygen/JEMIAN/.cache/pip/wheels/c9/de/a4/a91eec4eea652104d8c81b633f32ead5eb57d1b294eab24167 Building wheel for retrying (setup.py) ... done Stored in directory: /home/oxygen/JEMIAN/.cache/pip/wheels/d7/a9/33/acc7b709e2a35caa7d4cae442f6fe6fbf2c43f80823d46460c Successfully built peakutils pyimm xrayutilities PyNX sqlalchemy sqlalchemy-utils dill retrying Installing collected packages: bcdamenu, hdf5plugin, ipyparallel, retrying, plotly, sqlalchemy, sqlalchemy-utils, pydot, typeguard, lockfile, python-daemon, globus-sdk, dill, pynacl, bcrypt, paramiko, flask-sqlalchemy, parsl, peakutils, punx, pyepics, pyimm, xrayutilities, PyNX Found existing installation: SQLAlchemy 1.3.5 Uninstalling SQLAlchemy-1.3.5: Successfully uninstalled SQLAlchemy-1.3.5 Successfully installed PyNX-2018.2.0 bcdamenu-2019.5.0 bcrypt-3.1.7 dill-0.3.0 flask-sqlalchemy-2.4.0 globus-sdk-1.8.0 hdf5plugin-1.4.1 ipyparallel-6.2.4 lockfile-0.12.2 paramiko-2.6.0 parsl-0.8.0 peakutils-1.3.2 plotly-4.1.1 punx-0.2.2 pydot-1.4.1 pyepics-3.4.0 pyimm-1.0.7 pynacl-1.3.0 python-daemon-2.2.3 retrying-1.3.3 sqlalchemy-1.3.3 sqlalchemy-utils-0.34.2 typeguard-2.5.0 xrayutilities-1.5.2 ```

prjemian commented 4 years ago

now, need to compare with APSshare, use the exports.yml file

conda env export | tee export-local.txt

prjemian commented 4 years ago

Looks as expected ...

comparison: APSshare vs. local

``` name: demo_APSshare | name: base prefix: /local/sandbox/anaconda3/x86_64 < channels: channels: - conda-forge < - aps-anl-tag - aps-anl-tag - aps-anl-dev | - nexpy - prjemian - prjemian - defaults - defaults > - conda-forge dependencies: dependencies: #- _license=1.1=py36_1 | - _anaconda_depends=2019.03=py37_0 #- _nb_ext_conf=0.4.0=py36_1 | - _ipyw_jlab_nb_ext_conf=0.1.0=py37_0 - alabaster=0.7.12=py36_0 | - _libgcc_mutex=0.1=main - anaconda=custom=py36hbbc8b67_0 | - alabaster=0.7.12=py37_0 - anaconda-clean=1.1.0=py36_1 | - anaconda=custom=py37_1 - anaconda-client=1.7.2=py36_0 | - anaconda-client=1.7.2=py37_0 - anaconda-navigator=1.9.7=py36_0 | - anaconda-navigator=1.9.7=py37_0 - anaconda-project=0.8.2=py36_0 | - anaconda-project=0.8.3=py_0 - appdirs=1.4.3=py36h28b3542_0 | - ansi2html=1.5.2=py37_0 - argcomplete=1.9.5=py36_0 | - asn1crypto=0.24.0=py37_0 - asn1crypto=0.24.0=py36_0 | - astroid=2.2.5=py37_0 - astroid=2.2.5=py36_0 | - astropy=3.2.1=py37h7b6447c_0 - astropy=3.1.2=py36h7b6447c_0 | - atomicwrites=1.3.0=py37_1 - atomicwrites=1.3.0=py36_1 | - attrs=19.1.0=py37_1 - attrs=19.1.0=py36_1 | - babel=2.7.0=py_0 - automat=0.7.0=py36_0 | - backcall=0.1.0=py37_0 - babel=2.6.0=py36_0 | - backports=1.0=py_2 - backcall=0.1.0=py36_0 | - backports.functools_lru_cache=1.5=py_2 - backports=1.0=py36_1 | - backports.os=0.1.1=py37_0 - backports.os=0.1.1=py36_0 | - backports.shutil_get_terminal_size=1.0.0=py37_2 - backports.shutil_get_terminal_size=1.0.0=py36_2 | - backports.tempfile=1.0=py_1 - bcrypt=3.1.6=py36h7b6447c_0 | - backports.weakref=1.0.post1=py_1 - beautifulsoup4=4.7.1=py36_1 | - beautifulsoup4=4.7.1=py37_1 - bitarray=0.8.3=py36h14c3975_0 | - bitarray=0.9.3=py37h7b6447c_0 - bkcharts=0.2=py36h735825a_0 | - bkcharts=0.2=py37_0 - blas=1.0=mkl - blas=1.0=mkl - blaze=0.11.3=py36_0 | - bleach=3.1.0=py37_0 - bleach=3.1.0=py36_0 | - blosc=1.16.3=hd408876_0 - blosc=1.15.0=hd408876_0 | - bokeh=1.2.0=py37_0 - bokeh=1.0.4=py36_0 | - boto=2.49.0=py37_0 - boto=2.49.0=py36_0 | - bottleneck=1.2.1=py37h035aef0_1 - bottleneck=1.2.1=py36h035aef0_1 | - bzip2=1.0.8=h7b6447c_0 - bzip2=1.0.6=h14c3975_5 | - ca-certificates=2019.6.16=hecc5488_0 - ca-certificates=2019.3.9=hecc5488_0 < - cairo=1.14.12=h8948797_3 - cairo=1.14.12=h8948797_3 - certifi=2019.3.9=py36_0 | - certifi=2019.6.16=py37_1 - cffi=1.12.2=py36h2e261b9_1 | - cffi=1.12.3=py37h2e261b9_0 - chardet=3.0.4=py36_1 | - cftime=1.0.3.4=py37hd352d35_1001 - chest=0.2.3=py36_1 | - cfunits=3.1.1=py_0 - click=7.0=py36_0 | - chardet=3.0.4=py37_1 - cloudpickle=0.8.0=py36_0 | - click=7.0=py37_0 - clyent=1.2.2=py36_1 | - cloudpickle=1.2.1=py_0 - colorama=0.4.1=py36_0 | - clyent=1.2.2=py37_1 - conda=4.6.14=py36_0 | - colorama=0.4.1=py37_0 - conda-build=3.17.8=py36_0 | - conda=4.7.11=py37_0 > - conda-build=3.18.8=py37_0 - conda-env=2.6.0=1 - conda-env=2.6.0=1 - configobj=5.0.6=py36_1 | - conda-package-handling=1.3.11=py37_0 - constantly=15.1.0=py36h28b3542_0 | - conda-verify=3.4.2=py_1 - contextlib2=0.5.5=py36h6c84a62_0 | - contextlib2=0.5.5=py37_0 - cryptography=2.6.1=py36h1ba5d50_0 | - coverage=4.5.4=py37h516909a_0 - curl=7.64.0=hbc83047_2 | - coveralls=1.8.2=py_0 - cycler=0.10.0=py36h93f1223_0 | - cryptography=2.7=py37h1ba5d50_0 - cython=0.29.6=py36he6710b0_0 | - curl=7.65.2=hbc83047_0 - cytoolz=0.9.0.1=py36h14c3975_1 | - cycler=0.10.0=py37_0 - dask=1.1.4=py36_1 | - cython=0.29.13=py37he1b5a44_0 - dask-core=1.1.4=py36_1 | - cytoolz=0.10.0=py37h7b6447c_0 - datashape=0.5.4=py36_1 | - dask=2.1.0=py_0 > - dask-core=2.1.0=py_0 - dbus=1.13.6=h746ee38_0 - dbus=1.13.6=h746ee38_0 - decorator=4.4.0=py36_1 | - decorator=4.4.0=py37_1 - defusedxml=0.5.0=py36_1 | - defusedxml=0.6.0=py_0 - dill=0.2.9=py36_0 | - deprecated=1.2.6=py_0 - distributed=1.26.0=py36_1 | - distributed=2.1.0=py_0 - docutils=0.14=py36hb0f60f5_0 | - docopt=0.6.2=py_1 # - dynd-python=removed=0 | - docutils=0.14=py37_0 - entrypoints=0.3=py36_0 | - elasticsearch=7.0.0=py_0 - et_xmlfile=1.0.1=py36hd6bccc3_0 | - entrypoints=0.3=py37_0 > - epics-base=3.15.6=he1b5a44_0 > - et_xmlfile=1.0.1=py37_0 - expat=2.2.6=he6710b0_0 - expat=2.2.6=he6710b0_0 - fastcache=1.0.2=py36h14c3975_2 | - fabio=0.9.0=py37hc1659b7_1 - filelock=3.0.10=py36_0 | - fastcache=1.1.0=py37h7b6447c_0 - flask=1.0.2=py36_1 | - filelock=3.0.12=py_0 - flask-cors=3.0.7=py36_0 | - fisx=1.1.7=py37hb3f55d8_0 > - flask=1.1.1=py_0 - fontconfig=2.13.0=h9420a91_0 - fontconfig=2.13.0=h9420a91_0 - freetype=2.9.1=h8a8886c_1 - freetype=2.9.1=h8a8886c_1 - fribidi=1.0.5=h7b6447c_0 - fribidi=1.0.5=h7b6447c_0 > - future=0.17.1=py37_0 - get_terminal_size=1.0.0=haa9412d_0 - get_terminal_size=1.0.0=haa9412d_0 - gettext=0.19.8.1=hd7bead4_3 | - gettext=0.19.8.1=hc5be6a0_1002 - gevent=1.4.0=py36h7b6447c_0 | - gevent=1.4.0=py37h7b6447c_0 - glib=2.56.2=hd408876_0 - glib=2.56.2=hd408876_0 - glob2=0.6=py36_1 | - glob2=0.7=py_0 - gmp=6.1.2=h6c8ec71_1 - gmp=6.1.2=h6c8ec71_1 - gmpy2=2.0.8=py36h10f8cd9_2 | - gmpy2=2.0.8=py37h10f8cd9_2 - graphite2=1.3.13=h23475e2_0 - graphite2=1.3.13=h23475e2_0 - greenlet=0.4.15=py36h7b6447c_0 | - greenlet=0.4.15=py37h7b6447c_0 - gst-plugins-base=1.14.0=hbbd80ab_1 - gst-plugins-base=1.14.0=hbbd80ab_1 - gstreamer=1.14.0=hb453b48_1 - gstreamer=1.14.0=hb453b48_1 - h5py=2.9.0=py36h7918eee_0 | - h5py=2.9.0=nompi_py37hcafd542_1103 - harfbuzz=1.8.8=hffaf4a1_0 - harfbuzz=1.8.8=hffaf4a1_0 > - hdf4=4.2.13=0 - hdf5=1.10.4=hb1b8bf9_0 - hdf5=1.10.4=hb1b8bf9_0 - heapdict=1.0.0=py36_2 | - heapdict=1.0.0=py37_2 - html5lib=1.0.1=py36_0 | - html5lib=1.0.1=py37_0 - hyperlink=19.0.0=py_0 < - icalendar=4.0.3=py_0 - icalendar=4.0.3=py_0 - icu=58.2=h9c2bf20_1 - icu=58.2=h9c2bf20_1 - idna=2.8=py36_0 | - idna=2.8=py37_0 - imageio=2.5.0=py36_0 | - imageio=2.5.0=py37_0 - imagesize=1.1.0=py36_0 | - imagesize=1.1.0=py37_0 - importlib_metadata=0.8=py36_0 | - importlib_metadata=0.17=py37_1 - incremental=17.5.0=py36_0 | - intel-openmp=2019.4=243 - intel-openmp=2019.3=199 | - ipykernel=5.1.1=py37h39e3cac_0 - ipykernel=5.1.0=py36h39e3cac_0 | - ipython=7.6.1=py37h39e3cac_0 - ipython=7.4.0=py36h39e3cac_0 | - ipython_genutils=0.2.0=py37_0 - ipython_genutils=0.2.0=py36hb52b0d5_0 | - ipywidgets=7.5.0=py_0 - ipywidgets=7.4.2=py36_0 | - isort=4.3.21=py37_0 - isort=4.3.16=py36_0 | - itsdangerous=1.1.0=py37_0 - itsdangerous=1.1.0=py36_0 < - jbig=2.1=hdba287a_0 - jbig=2.1=hdba287a_0 - jdcal=1.4=py36_0 | - jdcal=1.4.1=py_0 - jedi=0.13.3=py36_0 | - jedi=0.13.3=py37_0 - jeepney=0.4=py36_0 | - jeepney=0.4=py37_0 - jinja2=2.10=py36_0 | - jinja2=2.10.1=py37_0 > - joblib=0.13.2=py37_0 - jpeg=9b=h024ee3a_2 - jpeg=9b=h024ee3a_2 - jsonschema=3.0.1=py36_0 | - json5=0.8.4=py_0 - jupyter=1.0.0=py36_7 | - jsonschema=3.0.1=py37_0 - jupyter_client=5.2.4=py36_0 | - jupyter=1.0.0=py37_7 - jupyter_console=6.0.0=py36_0 | - jupyter_client=5.3.1=py_0 - jupyter_core=4.4.0=py36_0 | - jupyter_console=6.0.0=py37_0 - jupyterlab=0.35.4=py36hf63ae98_0 | - jupyter_core=4.5.0=py_0 - jupyterlab_launcher=0.13.1=py36_0 | - jupyterlab=1.0.2=py37hf63ae98_0 - jupyterlab_server=0.2.0=py36_0 | - jupyterlab_server=1.0.0=py_0 - keyring=18.0.0=py36_0 | - keyring=18.0.0=py37_0 - kiwisolver=1.0.1=py36hf484d3e_0 | - kiwisolver=1.1.0=py37he6710b0_0 - krb5=1.16.1=h173b8e3_7 - krb5=1.16.1=h173b8e3_7 - lazy-object-proxy=1.3.1=py36h14c3975_2 | - lazy-object-proxy=1.4.1=py37h7b6447c_0 - libarchive=3.3.3=h5d8350f_5 - libarchive=3.3.3=h5d8350f_5 - libcurl=7.64.0=h20c2e04_2 | - libcurl=7.65.2=h20c2e04_0 #- libdynd=0.7.2=0 < - libedit=3.1.20181209=hc058e9b_0 - libedit=3.1.20181209=hc058e9b_0 - libffi=3.2.1=hd88cf55_4 - libffi=3.2.1=hd88cf55_4 - libgcc=7.2.0=h69d50b8_2 | - libgcc-ng=9.1.0=hdf63c60_0 - libgcc-ng=8.2.0=hdf63c60_1 < - libgfortran=3.0.0=1 < - libgfortran-ng=7.3.0=hdf63c60_0 - libgfortran-ng=7.3.0=hdf63c60_0 - libglu=9.0.0=hf484d3e_1 | - libglu=9.0.0=hf484d3e_1000 - liblief=0.9.0=h7725739_2 - liblief=0.9.0=h7725739_2 - libpng=1.6.36=hbc83047_0 | - libnetcdf=4.6.1=h11d0813_2 > - libpng=1.6.37=hbc83047_0 - libsodium=1.0.16=h1bed415_0 - libsodium=1.0.16=h1bed415_0 - libssh2=1.8.0=h1ba5d50_4 | - libssh2=1.8.2=h1ba5d50_0 - libstdcxx-ng=8.2.0=hdf63c60_1 | - libstdcxx-ng=9.1.0=hdf63c60_0 - libtiff=4.0.10=h2733197_2 - libtiff=4.0.10=h2733197_2 - libtool=2.4.6=h7b6447c_5 - libtool=2.4.6=h7b6447c_5 - libuuid=1.0.3=h1bed415_2 - libuuid=1.0.3=h1bed415_2 - libxcb=1.13=h1bed415_1 - libxcb=1.13=h1bed415_1 - libxml2=2.9.9=he19cac6_0 | - libxml2=2.9.9=hea5a465_1 - libxslt=1.1.33=h7d1a2b0_0 - libxslt=1.1.33=h7d1a2b0_0 - llvmlite=0.28.0=py36hd408876_0 | - llvmlite=0.29.0=py37hd408876_0 - locket=0.2.0=py36h787c0ad_1 | - locket=0.2.0=py37_1 - lxml=4.3.2=py36hefd8a0e_0 | - lxml=4.3.4=py37hefd8a0e_0 - lz4-c=1.8.1.2=h14c3975_0 - lz4-c=1.8.1.2=h14c3975_0 - lzo=2.10=h49e0be7_2 - lzo=2.10=h49e0be7_2 - markupsafe=1.1.1=py36h7b6447c_0 | - mako=1.1.0=py_0 - matplotlib=3.0.3=py36h5429711_0 | - markupsafe=1.1.1=py37h7b6447c_0 - mccabe=0.6.1=py36_1 | - matplotlib=3.1.0=py37h5429711_0 - mistune=0.8.4=py36h7b6447c_0 | - mccabe=0.6.1=py37_1 - mkl=2019.3=199 | - mistune=0.8.4=py37h7b6447c_0 - mkl-service=1.1.2=py36he904b0f_5 | - mkl=2019.4=243 - mkl_fft=1.0.10=py36ha843d7b_0 | - mkl-service=2.0.2=py37h7b6447c_0 - mkl_random=1.0.2=py36hd81dba3_0 | - mkl_fft=1.0.12=py37ha843d7b_0 - more-itertools=6.0.0=py36_0 | - mkl_random=1.0.2=py37hd81dba3_0 > - mock=3.0.5=py37_0 > - more-itertools=7.0.0=py37_0 - mpc=1.1.0=h10f8cd9_1 - mpc=1.1.0=h10f8cd9_1 - mpfr=4.0.1=hdf1c602_3 - mpfr=4.0.1=hdf1c602_3 - mpmath=1.1.0=py36_0 | - mpmath=1.1.0=py37_0 - msgpack-python=0.6.1=py36hfd86e86_1 | - msgpack-python=0.6.1=py37hfd86e86_1 - multipledispatch=0.6.0=py36_0 | - multipledispatch=0.6.0=py37_0 - nb_anacondacloud=1.4.0=py36_0 | - navigator-updater=0.2.1=py37_0 - nb_conda=2.2.1=py36_0 | - nbconvert=5.5.0=py_0 - nb_conda_kernels=2.2.0=py36_1 | - nbformat=4.4.0=py37_0 - nbconvert=5.4.1=py36_3 < - nbformat=4.4.0=py36h31c9010_0 < - nbpresent=3.0.2=py36_1 < - ncurses=6.1=he6710b0_1 - ncurses=6.1=he6710b0_1 - networkx=2.2=py36_1 | - netcdf4=1.4.2=py37h808af73_0 - nltk=3.4=py36_1 | - networkx=2.3=py_0 - nose=1.3.7=py36_2 | - nexpy=0.11.0=py37_0 - notebook=5.7.8=py36_0 | - nexusformat=0.4.20=py37_0 - numba=0.43.1=py36h962f231_0 | - nltk=3.4.4=py37_0 - numexpr=2.6.9=py36h9e4a6bb_0 | - nose=1.3.7=py37_2 - numpy=1.16.2=py36h7e9f1db_0 | - notebook=6.0.0=py37_0 - numpy-base=1.16.2=py36hde5b4d6_0 | - numba=0.45.1=py37hb3f55d8_0 - numpydoc=0.8.0=py36_0 | - numexpr=2.6.9=py37h9e4a6bb_0 - odo=0.5.1=py36_0 | - numpy=1.16.4=py37h7e9f1db_0 - olefile=0.46=py36_0 | - numpy-base=1.16.4=py37hde5b4d6_0 - openpyxl=2.6.1=py36_1 | - numpydoc=0.9.1=py_0 - openssl=1.1.1b=h14c3975_1 | - olefile=0.46=py37_0 - packaging=19.0=py36_0 | - openpyxl=2.6.2=py_0 - pandas=0.24.2=py36he6710b0_0 | - openssl=1.1.1c=h516909a_0 - pandoc=2.2.3.2=0 | - packaging=19.0=py37_0 - pandocfilters=1.4.2=py36_1 | - pandas=0.24.2=py37he6710b0_0 > - pandoc=2.7.3=0 > - pandocfilters=1.4.2=py37_1 - pango=1.42.4=h049681c_0 - pango=1.42.4=h049681c_0 - parso=0.3.4=py36_0 | - parso=0.5.0=py_0 - partd=0.3.10=py36_1 | - partd=1.0.0=py_0 - patchelf=0.9=he6710b0_3 - patchelf=0.9=he6710b0_3 - path.py=11.5.0=py36_0 | - path.py=12.0.1=py_0 - pathlib2=2.3.3=py36_0 | - pathlib2=2.3.4=py37_0 - patsy=0.5.1=py36_0 | - patsy=0.5.1=py37_0 - pcre=8.43=he6710b0_0 - pcre=8.43=he6710b0_0 - pep8=1.7.1=py36_0 | - pep8=1.7.1=py37_0 - pexpect=4.6.0=py36_0 | - pexpect=4.7.0=py37_0 - pickleshare=0.7.5=py36_0 | - pickleshare=0.7.5=py37_0 - pillow=5.4.1=py36h34e0f95_0 | - pillow=6.1.0=py37h34e0f95_0 - pip=19.0.3=py36_0 | - pip=19.1.1=py37_0 - pixman=0.38.0=h7b6447c_0 - pixman=0.38.0=h7b6447c_0 - pkginfo=1.5.0.1=py36_0 | - pkginfo=1.5.0.1=py37_0 - pluggy=0.9.0=py36_0 | - pluggy=0.12.0=py_0 - ply=3.11=py36_0 | - ply=3.11=py37_0 - prometheus_client=0.6.0=py36_0 | - prometheus_client=0.7.1=py_0 - prompt_toolkit=2.0.9=py36_0 | - prompt_toolkit=2.0.9=py37_0 - psutil=5.6.1=py36h7b6447c_0 | - psutil=5.6.3=py37h7b6447c_0 - ptyprocess=0.6.0=py36_0 | - ptyprocess=0.6.0=py37_0 - py=1.8.0=py36_0 | - py=1.8.0=py37_0 - py-lief=0.9.0=py36h7725739_2 | - py-lief=0.9.0=py37h7725739_2 - pyasn1=0.4.5=py_0 | - pycodestyle=2.5.0=py37_0 - pyasn1-modules=0.2.4=py36_0 | - pycosat=0.6.3=py37h14c3975_0 - pycodestyle=2.5.0=py36_0 | - pycparser=2.19=py37_0 - pycosat=0.6.3=py36h14c3975_0 | - pycrypto=2.6.1=py37h14c3975_9 - pycparser=2.19=py36_0 | - pycurl=7.43.0.3=py37h1ba5d50_0 - pycrypto=2.6.1=py36h14c3975_9 | - pyflakes=2.1.1=py37_0 - pycurl=7.43.0.2=py36h1ba5d50_0 | - pygithub=1.43.6=py37_0 - pyflakes=2.1.1=py36_0 | - pygments=2.4.2=py_0 - pygments=2.3.1=py36_0 | - pyjwt=1.7.1=py_0 - pyhamcrest=1.9.0=py36_2 | - pylint=2.3.1=py37_0 - pyjwt=1.7.1=py36_0 | - pymca=5.5.1=py37hc1659b7_0 - pylint=2.3.1=py36_0 | - pyodbc=4.0.26=py37he6710b0_0 - pyodbc=4.0.26=py36he6710b0_0 | - pyopenssl=19.0.0=py37_0 - pyopenssl=19.0.0=py36_0 | - pyparsing=2.4.0=py_0 - pyparsing=2.3.1=py36_0 | - pyqt=5.9.2=py37hcca6a23_2 - pyqt=5.9.2=py36h05f1152_2 | - pyqtgraph=0.10.0=py_5 - pyqtgraph=0.10.0=py36h28b3542_3 | - pyresttable=2020.0.2=py_0 - pyresttable=2019.0321.0=py_0 | - pyrsistent=0.14.11=py37h7b6447c_0 - pyrsistent=0.14.11=py36h7b6447c_0 | - pysocks=1.7.0=py37_0 - pysocks=1.6.8=py36_0 | - pytables=3.5.2=py37h71ec239_1 - pytables=3.5.1=py36h71ec239_0 | - pytest=5.1.2=py37_0 - pytest=4.3.1=py36_0 | - pytest-arraydiff=0.3=py37h39e3cac_0 - pytest-arraydiff=0.3=py36h39e3cac_0 | - pytest-astropy=0.5.0=py37_0 - pytest-astropy=0.5.0=py36_0 | - pytest-doctestplus=0.3.0=py37_0 - pytest-doctestplus=0.3.0=py36_0 | - pytest-html=1.22.0=py_0 - pytest-html=1.20.0=py36_0 | - pytest-metadata=1.8.0=py_0 - pytest-metadata=1.8.0=py36_0 | - pytest-openfiles=0.3.2=py37_0 - pytest-openfiles=0.3.2=py36_0 | - pytest-remotedata=0.3.1=py37_0 - pytest-remotedata=0.3.1=py36_0 | - python=3.7.3=h0371630_0 - python=3.6.8=h0371630_0 | - python-dateutil=2.8.0=py37_0 - python-dateutil=2.8.0=py36_0 | - python-libarchive-c=2.8=py37_11 - python-libarchive-c=2.8=py36_6 | - pytz=2019.1=py_0 - pytz=2018.9=py36_0 | - pywavelets=1.0.3=py37hdd07704_1 - pywavelets=1.0.2=py36hdd07704_0 | - pyyaml=5.1.1=py37h7b6447c_0 - pyyaml=5.1=py36h7b6447c_0 | - pyzmq=18.0.0=py37he6710b0_0 - pyzmq=18.0.0=py36he6710b0_0 < - qt=5.9.7=h5867ecd_1 - qt=5.9.7=h5867ecd_1 - qtawesome=0.5.7=py36_1 | - qtawesome=0.5.7=py37_1 - qtconsole=4.4.3=py36_0 | - qtconsole=4.5.1=py_0 - qtpy=1.7.0=py36_1 | - qtpy=1.8.0=py_0 - readline=7.0=h7b6447c_5 - readline=7.0=h7b6447c_5 - redis=5.0.3=h7b6447c_0 | - requests=2.22.0=py37_0 - redis-py=3.2.1=py_0 | - rope=0.14.0=py_0 - requests=2.21.0=py36_0 | - ruamel_yaml=0.15.46=py37h14c3975_0 - rope=0.12.0=py36_0 | - scikit-image=0.15.0=py37he6710b0_0 - ruamel_yaml=0.15.46=py36h14c3975_0 | - scikit-learn=0.21.2=py37hd81dba3_0 - scikit-image=0.14.2=py36he6710b0_0 | - scipy=1.3.0=py37h7c811a0_0 - scikit-learn=0.20.3=py36hd81dba3_0 | - seaborn=0.9.0=py37_0 - scipy=1.2.1=py36h7c811a0_0 | - secretstorage=3.1.1=py37_0 - seaborn=0.9.0=py36_0 | - send2trash=1.5.0=py37_0 - secretstorage=3.1.1=py36_0 | - setuptools=41.0.1=py37_0 - send2trash=1.5.0=py36_0 | - silx=0.11.0=py37hb3f55d8_0 - service_identity=18.1.0=py36h28b3542_0 | - simplegeneric=0.8.1=py37_2 - setuptools=40.8.0=py36_0 | - singledispatch=3.4.0.3=py37_0 - simplegeneric=0.8.1=py36_2 | - sip=4.19.8=py37hf484d3e_0 - singledispatch=3.4.0.3=py36h7a266c3_0 | - six=1.12.0=py37_0 - sip=4.19.8=py36hf484d3e_0 < - six=1.12.0=py36_0 < - snappy=1.1.7=hbae5bb6_3 - snappy=1.1.7=hbae5bb6_3 - snowballstemmer=1.2.1=py36h6febd40_0 | - snowballstemmer=1.9.0=py_0 - sockjs-tornado=1.0.6=py36_0 | - sortedcollections=1.1.2=py37_0 - sortedcollections=1.1.2=py36_0 | - sortedcontainers=2.1.0=py37_0 - sortedcontainers=2.1.0=py36_0 | - soupsieve=1.8=py37_0 - soupsieve=1.8=py36_0 | - sparse=0.8.0=py_0 - spec2nexus=2020.0.0=pyh39e3cac_0 | - spec2nexus=2021.1.3=h39e3cac_0 - sphinx=1.8.5=py36_0 | - sphinx=2.2.0=py_0 - sphinxcontrib=1.0=py36_1 | - sphinx_rtd_theme=0.4.3=py_0 - sphinxcontrib-websupport=1.1.0=py36_1 | - sphinxcontrib=1.0=py37_1 - spyder=3.3.3=py36_0 | - sphinxcontrib-applehelp=1.0.1=py_0 - spyder-kernels=0.4.2=py36_0 | - sphinxcontrib-devhelp=1.0.1=py_0 - sqlalchemy=1.3.1=py36h7b6447c_0 | - sphinxcontrib-htmlhelp=1.0.2=py_0 - sqlite=3.27.2=h7b6447c_0 | - sphinxcontrib-jsmath=1.0.1=py_0 - statsmodels=0.9.0=py36h035aef0_0 | - sphinxcontrib-qthelp=1.0.2=py_0 - sympy=1.3=py36_0 | - sphinxcontrib-serializinghtml=1.1.3=py_0 - tblib=1.3.2=py36h34cf8b6_0 | - sphinxcontrib-websupport=1.1.2=py_0 - terminado=0.8.1=py36_1 | - spyder=3.3.6=py37_0 - testpath=0.4.2=py36_0 | - spyder-kernels=0.5.1=py37_0 > - sqlite=3.29.0=h7b6447c_0 > - statsmodels=0.10.0=py37hdd07704_0 > - sympy=1.4=py37_0 > - tblib=1.4.0=py_0 > - terminado=0.8.2=py37_0 > - testpath=0.4.2=py37_0 - tk=8.6.8=hbc83047_0 - tk=8.6.8=hbc83047_0 - toolz=0.9.0=py36_0 | - toolz=0.10.0=py_0 - tornado=6.0.2=py36h7b6447c_0 | - tornado=6.0.3=py37h7b6447c_0 - tqdm=4.31.1=py36_1 | - tqdm=4.35.0=py_0 - traitlets=4.3.2=py36h674d592_0 | - traitlets=4.3.2=py37_0 - twisted=19.2.0=py36h7b6447c_0 | - udunits2=2.2.27.6=h4e0c4b3_1001 - typed-ast=1.3.1=py36h7b6447c_0 | - unicodecsv=0.14.1=py37_0 - typing=3.6.4=py36_0 < - unicodecsv=0.14.1=py36ha668878_0 < - unixodbc=2.3.7=h14c3975_0 - unixodbc=2.3.7=h14c3975_0 - urllib3=1.24.1=py36_0 | - urllib3=1.24.2=py37_0 - wcwidth=0.1.7=py36hdf4376a_0 | - wcwidth=0.1.7=py37_0 - webencodings=0.5.1=py36_1 | - webencodings=0.5.1=py37_1 - werkzeug=0.14.1=py36_0 | - werkzeug=0.15.4=py_0 - wheel=0.33.1=py36_0 | - wheel=0.33.4=py37_0 - widgetsnbextension=3.4.2=py36_0 | - widgetsnbextension=3.5.0=py37_0 - wrapt=1.11.1=py36h7b6447c_0 | - wrapt=1.11.2=py37h7b6447c_0 - wurlitzer=1.0.2=py36_0 | - wurlitzer=1.0.2=py37_0 - wxpython=4.0.4=py36hc99224d_0 | - wxpython=4.0.4=py37hc99224d_0 - xlrd=1.2.0=py36_0 | - xlrd=1.2.0=py37_0 - xlsxwriter=1.1.5=py36_0 | - xlsxwriter=1.1.8=py_0 - xlwt=1.3.0=py36h7b00a1f_0 | - xlwt=1.3.0=py37_0 - xz=5.2.4=h14c3975_4 - xz=5.2.4=h14c3975_4 - yaml=0.1.7=had09818_2 - yaml=0.1.7=had09818_2 - zeromq=4.3.1=he6710b0_3 - zeromq=4.3.1=he6710b0_3 - zict=0.1.4=py36_0 | - zict=1.0.0=py_0 - zipp=0.3.3=py36_1 | - zipp=0.5.1=py_0 - zlib=1.2.11=h7b6447c_3 - zlib=1.2.11=h7b6447c_3 - zope=1.0=py36_1 < - zope.interface=4.6.0=py36h7b6447c_0 < - zstd=1.3.7=h0b5b093_0 - zstd=1.3.7=h0b5b093_0 - pip: - pip: - deprecated==1.2.4 | - bcdamenu==2019.5.0 - fabio==0.8.0 | - bcrypt==3.1.7 > - dill==0.3.0 > - flask-sqlalchemy==2.4.0 > - globus-sdk==1.8.0 - hdf5plugin==1.4.1 - hdf5plugin==1.4.1 > - ipyparallel==6.2.4 > - lockfile==0.12.2 > - paramiko==2.6.0 > - parsl==0.8.0 > - peakutils==1.3.2 > - plotly==4.1.1 - punx==0.2.2 - punx==0.2.2 - pyepics==3.3.2 | - pydot==1.4.1 - pygithub==1.43.4 | - pyepics==3.4.0 - pyimm==1.0.7 - pyimm==1.0.7 # - pynx==2018.2.0 We have a tarball for pynx | - pynacl==1.3.0 - silx==0.10.0 | - pynx==2018.2.0 > - python-daemon==2.2.3 > - retrying==1.3.3 > - sqlalchemy==1.3.3 > - sqlalchemy-utils==0.34.2 > - typeguard==2.5.0 > - xrayutilities==1.5.2 > prefix: /local/sandbox/anaconda3 > ```

prjemian commented 4 years ago

Tried to install VS Code (per #4) but could not proceed since it asked for SysAdmin credentials (to sudo install components).

prjemian commented 4 years ago

bash installer script:

#!/bin/bash

CHANNELS=""
CHANNELS="${CHANNELS}  -c conda-forge"
CHANNELS="${CHANNELS}  -c aps-anl-tag"
CHANNELS="${CHANNELS}  -c apsu"
CHANNELS="${CHANNELS}  -c prjemian"
CHANNELS="${CHANNELS}  -c nexpy"

INSTALLER=Anaconda3-2019.07-Linux-x86_64.sh
TARGET_DIR=/local/sandbox/anaconda3

conda deactivate
wget https://repo.continuum.io/archive/${INSTALLER}
bash ./${INSTALLER} -b -p ${TARGET_DIR}
source ${TARGET_DIR}/bin/activate
conda install --yes ${CHANNELS} --file requirements-conda.txt
pip install -r requirements-pip.txt
conda env export | tee export-new.yml

prjemian commented 4 years ago

requirements-conda.txt

anaconda
cfunits
coverage
coveralls
cython
Deprecated
elasticsearch
epics-base
fabio
h5py
icalendar
nexpy
pandoc
PyGitHub
PyJWT
PyMCA
PyQT
pyqtgraph
pyRestTable
pytest
pytest-html
pytest-metadata
Qt
silx
sparse 
spec2nexus
sphinx
sphinx_rtd_theme
tqdm
wxpython

prjemian commented 4 years ago

requirements-pip.txt

bcdamenu
hdf5plugin
http://ftp.esrf.fr/pub/scisoft/PyNX/pynx-2018.2.0.tar.bz2
parsl
peakutils
punx
pyepics
pyimm
xrayutilities

prjemian commented 4 years ago

summary replace the Python3-64 installation per the above procedure

prjemian commented 4 years ago

Following this installation on /APSshare:

cd /APSshare/anaconda3
mv x86_64/ x86_64-RESTORED/
# following procedure developed for this maintenance
# https://github.com/BCDA-APS/APSshare-anaconda-issues/issues/3#issuecomment-528128753
mkdir rebuild
cd rebuild
# copy installer.sh, requirements-{conda,pip}.txt into ./
# edit TARGET_DIR=/APSshare/anaconda3/x86_64
bash ./installer.sh 2>&1 | tee installer.log

prjemian commented 4 years ago

Here is the contents of the rebuild directory after installation (and removal of the Anaconda installer):

rebuild.zip

prjemian commented 4 years ago

These installer files are a good justification to change this repo from issues-only to normal.

prjemian commented 4 years ago

Also rename the repo with appropriate name.

prjemian commented 4 years ago

This work is complete. Open new issues if there are problems.

BCDA-APS / APSshare-anaconda-management

update Python3, 64-bit #3