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BCDA-APS / apstools

various tools for use with Bluesky at the APS
https://bcda-aps.github.io/apstools/latest/
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problem with conda build - can't publish #280

Closed prjemian closed 4 years ago

prjemian commented 4 years ago

Problem with the conda build process when specifying the ophyd version. We want newer ophyd than 1.3.3. Because of this, we cannot make a conda build, although the PyPI upload is working.

Traceback (most recent call last):
  File "/home/mintadmin/Apps/anaconda/lib/python3.7/site-packages/conda_build/environ.py", line 756, in get_install_actions
    actions = install_actions(prefix, index, specs, force=True)
  File "/home/mintadmin/Apps/anaconda/lib/python3.7/site-packages/conda/common/io.py", line 88, in decorated
    return f(*args, **kwds)
  File "/home/mintadmin/Apps/anaconda/lib/python3.7/site-packages/conda/plan.py", line 474, in install_actions
    txn = solver.solve_for_transaction(prune=prune, ignore_pinned=not pinned)
  File "/home/mintadmin/Apps/anaconda/lib/python3.7/site-packages/conda/core/solve.py", line 117, in solve_for_transaction
    should_retry_solve)
  File "/home/mintadmin/Apps/anaconda/lib/python3.7/site-packages/conda/core/solve.py", line 158, in solve_for_diff
    force_remove, should_retry_solve)
  File "/home/mintadmin/Apps/anaconda/lib/python3.7/site-packages/conda/core/solve.py", line 275, in solve_final_state
    ssc = self._add_specs(ssc)
  File "/home/mintadmin/Apps/anaconda/lib/python3.7/site-packages/conda/core/solve.py", line 555, in _add_specs
    explicit_pool = ssc.r._get_package_pool(self.specs_to_add)
  File "/home/mintadmin/Apps/anaconda/lib/python3.7/site-packages/conda/resolve.py", line 531, in _get_package_pool
    pool = self.get_reduced_index(specs)
  File "/home/mintadmin/Apps/anaconda/lib/python3.7/site-packages/conda/common/io.py", line 88, in decorated
    return f(*args, **kwds)
  File "/home/mintadmin/Apps/anaconda/lib/python3.7/site-packages/conda/resolve.py", line 552, in get_reduced_index
    explicit_specs, features = self.verify_specs(explicit_specs)
  File "/home/mintadmin/Apps/anaconda/lib/python3.7/site-packages/conda/resolve.py", line 288, in verify_specs
    raise ResolvePackageNotFound(bad_deps)
conda.exceptions.ResolvePackageNotFound: 
  - ophyd=1.4.0rc4

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/home/mintadmin/Apps/anaconda/lib/python3.7/site-packages/conda_build/build.py", line 2313, in build_tree
    notest=notest,
  File "/home/mintadmin/Apps/anaconda/lib/python3.7/site-packages/conda_build/build.py", line 1377, in build
    create_build_envs(top_level_pkg, notest)
  File "/home/mintadmin/Apps/anaconda/lib/python3.7/site-packages/conda_build/build.py", line 1279, in create_build_envs
    raise e
  File "/home/mintadmin/Apps/anaconda/lib/python3.7/site-packages/conda_build/build.py", line 1269, in create_build_envs
    channel_urls=tuple(m.config.channel_urls))
  File "/home/mintadmin/Apps/anaconda/lib/python3.7/site-packages/conda_build/environ.py", line 758, in get_install_actions
    raise DependencyNeedsBuildingError(exc, subdir=subdir)
conda_build.exceptions.DependencyNeedsBuildingError: Unsatisfiable dependencies for platform linux-64: {'ophyd=1.4.0rc4'}

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/home/mintadmin/Apps/anaconda/bin/conda-build", line 11, in <module>
    sys.exit(main())
  File "/home/mintadmin/Apps/anaconda/lib/python3.7/site-packages/conda_build/cli/main_build.py", line 445, in main
    execute(sys.argv[1:])
  File "/home/mintadmin/Apps/anaconda/lib/python3.7/site-packages/conda_build/cli/main_build.py", line 436, in execute
    verify=args.verify, variants=args.variants)
  File "/home/mintadmin/Apps/anaconda/lib/python3.7/site-packages/conda_build/api.py", line 209, in build
    notest=notest, need_source_download=need_source_download, variants=variants)
  File "/home/mintadmin/Apps/anaconda/lib/python3.7/site-packages/conda_build/build.py", line 2430, in build_tree
    dep_metas = render_recipe(recipe_dir, config=metadata.config)
  File "/home/mintadmin/Apps/anaconda/lib/python3.7/site-packages/conda_build/render.py", line 786, in render_recipe
    m = MetaData(recipe_dir, config=config)
  File "/home/mintadmin/Apps/anaconda/lib/python3.7/site-packages/conda_build/metadata.py", line 848, in __init__
    self._meta_path = find_recipe(path)
  File "/home/mintadmin/Apps/anaconda/lib/python3.7/site-packages/conda_build/utils.py", line 1211, in find_recipe
    raise IOError("No meta.yaml or conda.yaml files found in %s" % path)
OSError: No meta.yaml or conda.yaml files found in /home/mintadmin/Documents/eclipse/ophyd
upload to conda
CHANNEL: aps-anl-dev
Using Anaconda API: https://api.anaconda.org
[WARNING] Token warning: expires in 28 days
Using "aps-anl-dev" as upload username
[ERROR] File "/tmp/conda-bld/noarch/apstools-1.1.17rc2-*_0.tar.bz2" does not exist
Using Anaconda API: https://api.anaconda.org
[WARNING] Token warning: expires in 28 days
Using "prjemian" as upload username
[ERROR] File "/tmp/conda-bld/noarch/apstools-1.1.17rc2-*_0.tar.bz2" does not exist
prjemian commented 4 years ago

Can't specify ophyd=1.4.0rc4 for conda install because it does not exist, but rc3 is available. Try that.

prjemian commented 4 years ago
latest failed ./publish.sh output

``` (bluesky) mintadmin@mint-vm:~/.../eclipse/apstools$ ./publish.sh PACKAGE: apstools RELEASE: 1.1.17rc3 Building for upload to PyPI running sdist running egg_info writing apstools.egg-info/PKG-INFO writing dependency_links to apstools.egg-info/dependency_links.txt writing entry points to apstools.egg-info/entry_points.txt writing requirements to apstools.egg-info/requires.txt writing top-level names to apstools.egg-info/top_level.txt reading manifest file 'apstools.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'apstools.egg-info/SOURCES.txt' running check creating apstools-1.1.17rc3 creating apstools-1.1.17rc3/apstools creating apstools-1.1.17rc3/apstools.egg-info creating apstools-1.1.17rc3/apstools/synApps copying files to apstools-1.1.17rc3... copying CHANGES.rst -> apstools-1.1.17rc3 copying LICENSE.txt -> apstools-1.1.17rc3 copying MANIFEST.in -> apstools-1.1.17rc3 copying README.md -> apstools-1.1.17rc3 copying setup.cfg -> apstools-1.1.17rc3 copying setup.py -> apstools-1.1.17rc3 copying versioneer.py -> apstools-1.1.17rc3 copying apstools/__init__.py -> apstools-1.1.17rc3/apstools copying apstools/_requirements.py -> apstools-1.1.17rc3/apstools copying apstools/_version.py -> apstools-1.1.17rc3/apstools copying apstools/callbacks.py -> apstools-1.1.17rc3/apstools copying apstools/devices.py -> apstools-1.1.17rc3/apstools copying apstools/examples.py -> apstools-1.1.17rc3/apstools copying apstools/filewriters.py -> apstools-1.1.17rc3/apstools copying apstools/plans.py -> apstools-1.1.17rc3/apstools copying apstools/run_snapshot.py -> apstools-1.1.17rc3/apstools copying apstools/run_snapshot_gui.py -> apstools-1.1.17rc3/apstools copying apstools/signals.py -> apstools-1.1.17rc3/apstools copying apstools/snapshot.py -> apstools-1.1.17rc3/apstools copying apstools/suspenders.py -> apstools-1.1.17rc3/apstools copying apstools/textreadonly.py -> apstools-1.1.17rc3/apstools copying apstools/utils.py -> apstools-1.1.17rc3/apstools copying apstools.egg-info/PKG-INFO -> apstools-1.1.17rc3/apstools.egg-info copying apstools.egg-info/SOURCES.txt -> apstools-1.1.17rc3/apstools.egg-info copying apstools.egg-info/dependency_links.txt -> apstools-1.1.17rc3/apstools.egg-info copying apstools.egg-info/entry_points.txt -> apstools-1.1.17rc3/apstools.egg-info copying apstools.egg-info/not-zip-safe -> apstools-1.1.17rc3/apstools.egg-info copying apstools.egg-info/requires.txt -> apstools-1.1.17rc3/apstools.egg-info copying apstools.egg-info/top_level.txt -> apstools-1.1.17rc3/apstools.egg-info copying apstools/synApps/__init__.py -> apstools-1.1.17rc3/apstools/synApps copying apstools/synApps/_common.py -> apstools-1.1.17rc3/apstools/synApps copying apstools/synApps/asyn.py -> apstools-1.1.17rc3/apstools/synApps copying apstools/synApps/busy.py -> apstools-1.1.17rc3/apstools/synApps copying apstools/synApps/calcout.py -> apstools-1.1.17rc3/apstools/synApps copying apstools/synApps/epid.py -> apstools-1.1.17rc3/apstools/synApps copying apstools/synApps/save_data.py -> apstools-1.1.17rc3/apstools/synApps copying apstools/synApps/sscan.py -> apstools-1.1.17rc3/apstools/synApps copying apstools/synApps/swait.py -> apstools-1.1.17rc3/apstools/synApps copying apstools/synApps/transform.py -> apstools-1.1.17rc3/apstools/synApps Writing apstools-1.1.17rc3/setup.cfg UPDATING apstools-1.1.17rc3/apstools/_version.py set apstools-1.1.17rc3/apstools/_version.py to '1.1.17rc3' Creating tar archive removing 'apstools-1.1.17rc3' (and everything under it) running bdist_wheel running build running build_py UPDATING build/lib/apstools/_version.py set build/lib/apstools/_version.py to '1.1.17rc3' installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/apstools copying build/lib/apstools/__init__.py -> build/bdist.linux-x86_64/wheel/apstools copying build/lib/apstools/_version.py -> build/bdist.linux-x86_64/wheel/apstools copying build/lib/apstools/devices.py -> build/bdist.linux-x86_64/wheel/apstools copying build/lib/apstools/examples.py -> build/bdist.linux-x86_64/wheel/apstools copying build/lib/apstools/run_snapshot_gui.py -> build/bdist.linux-x86_64/wheel/apstools copying build/lib/apstools/suspenders.py -> build/bdist.linux-x86_64/wheel/apstools copying build/lib/apstools/utils.py -> build/bdist.linux-x86_64/wheel/apstools copying build/lib/apstools/snapshot.py -> build/bdist.linux-x86_64/wheel/apstools copying build/lib/apstools/signals.py -> build/bdist.linux-x86_64/wheel/apstools creating build/bdist.linux-x86_64/wheel/apstools/synApps copying build/lib/apstools/synApps/__init__.py -> build/bdist.linux-x86_64/wheel/apstools/synApps copying build/lib/apstools/synApps/epid.py -> build/bdist.linux-x86_64/wheel/apstools/synApps copying build/lib/apstools/synApps/busy.py -> build/bdist.linux-x86_64/wheel/apstools/synApps copying build/lib/apstools/synApps/asyn.py -> build/bdist.linux-x86_64/wheel/apstools/synApps copying build/lib/apstools/synApps/swait.py -> build/bdist.linux-x86_64/wheel/apstools/synApps copying build/lib/apstools/synApps/sscan.py -> build/bdist.linux-x86_64/wheel/apstools/synApps copying build/lib/apstools/synApps/save_data.py -> build/bdist.linux-x86_64/wheel/apstools/synApps copying build/lib/apstools/synApps/transform.py -> build/bdist.linux-x86_64/wheel/apstools/synApps copying build/lib/apstools/synApps/calcout.py -> build/bdist.linux-x86_64/wheel/apstools/synApps copying build/lib/apstools/synApps/_common.py -> build/bdist.linux-x86_64/wheel/apstools/synApps copying build/lib/apstools/plans.py -> build/bdist.linux-x86_64/wheel/apstools copying build/lib/apstools/filewriters.py -> build/bdist.linux-x86_64/wheel/apstools copying build/lib/apstools/textreadonly.py -> build/bdist.linux-x86_64/wheel/apstools copying build/lib/apstools/run_snapshot.py -> build/bdist.linux-x86_64/wheel/apstools copying build/lib/apstools/callbacks.py -> build/bdist.linux-x86_64/wheel/apstools copying build/lib/apstools/_requirements.py -> build/bdist.linux-x86_64/wheel/apstools running install_egg_info Copying apstools.egg-info to build/bdist.linux-x86_64/wheel/apstools-1.1.17rc3-py3.7.egg-info running install_scripts adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*") creating build/bdist.linux-x86_64/wheel/apstools-1.1.17rc3.dist-info/WHEEL creating 'dist/apstools-1.1.17rc3-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'apstools/__init__.py' adding 'apstools/_requirements.py' adding 'apstools/_version.py' adding 'apstools/callbacks.py' adding 'apstools/devices.py' adding 'apstools/examples.py' adding 'apstools/filewriters.py' adding 'apstools/plans.py' adding 'apstools/run_snapshot.py' adding 'apstools/run_snapshot_gui.py' adding 'apstools/signals.py' adding 'apstools/snapshot.py' adding 'apstools/suspenders.py' adding 'apstools/textreadonly.py' adding 'apstools/utils.py' adding 'apstools/synApps/__init__.py' adding 'apstools/synApps/_common.py' adding 'apstools/synApps/asyn.py' adding 'apstools/synApps/busy.py' adding 'apstools/synApps/calcout.py' adding 'apstools/synApps/epid.py' adding 'apstools/synApps/save_data.py' adding 'apstools/synApps/sscan.py' adding 'apstools/synApps/swait.py' adding 'apstools/synApps/transform.py' adding 'apstools-1.1.17rc3.dist-info/LICENSE.txt' adding 'apstools-1.1.17rc3.dist-info/METADATA' adding 'apstools-1.1.17rc3.dist-info/WHEEL' adding 'apstools-1.1.17rc3.dist-info/entry_points.txt' adding 'apstools-1.1.17rc3.dist-info/top_level.txt' adding 'apstools-1.1.17rc3.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Uploading distributions to https://upload.pypi.org/legacy/ Uploading apstools-1.1.17rc3-py3-none-any.whl 100%|██████████████████████████████████████████████████████████████████████████████████████████████████| 84.8k/84.8k [00:01<00:00, 48.6kB/s] Uploading apstools-1.1.17rc3.tar.gz 100%|██████████████████████████████████████████████████████████████████████████████████████████████████| 87.2k/87.2k [00:01<00:00, 56.2kB/s] Building for upload to conda No numpy version specified in conda_build_config.yaml. Falling back to default numpy value of 1.11 WARNING:conda_build.metadata:No numpy version specified in conda_build_config.yaml. Falling back to default numpy value of 1.11 Copying /home/mintadmin/Documents/eclipse/apstools to /tmp/conda-bld/apstools_1580510273746/work/ Adding in variants from internal_defaults INFO:conda_build.variants:Adding in variants from internal_defaults Attempting to finalize metadata for apstools INFO:conda_build.metadata:Attempting to finalize metadata for apstools Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done BUILD START: ['apstools-1.1.17rc3-py_0.tar.bz2'] Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /tmp/conda-bld/apstools_1580510273746/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_ The following NEW packages will be INSTALLED: _libgcc_mutex: 0.1-main ca-certificates: 2020.1.1-0 certifi: 2019.11.28-py37_0 ld_impl_linux-64: 2.33.1-h53a641e_7 libedit: 3.1.20181209-hc058e9b_0 libffi: 3.2.1-hd88cf55_4 libgcc-ng: 9.1.0-hdf63c60_0 libstdcxx-ng: 9.1.0-hdf63c60_0 ncurses: 6.1-he6710b0_1 openssl: 1.1.1d-h7b6447c_3 pip: 20.0.2-py37_1 python: 3.7.6-h0371630_2 readline: 7.0-h7b6447c_5 setuptools: 45.1.0-py37_0 sqlite: 3.30.1-h7b6447c_0 tk: 8.6.8-hbc83047_0 wheel: 0.34.1-py37_0 xz: 5.2.4-h14c3975_4 zlib: 1.2.11-h7b6447c_3 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done source tree in: /tmp/conda-bld/apstools_1580510273746/work export PREFIX=/tmp/conda-bld/apstools_1580510273746/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_ export BUILD_PREFIX=/tmp/conda-bld/apstools_1580510273746/_build_env export SRC_DIR=/tmp/conda-bld/apstools_1580510273746/work Processing $SRC_DIR Building wheels for collected packages: apstools Building wheel for apstools (setup.py): started Building wheel for apstools (setup.py): finished with status 'done' Created wheel for apstools: filename=apstools-1.1.17rc3-py3-none-any.whl size=79924 sha256=3b4900b915c8eac86aec6426fcda7a4a591d8ba92edb3c61102123d50e231141 Stored in directory: /tmp/pip-ephem-wheel-cache-cw3dnfbb/wheels/b8/05/f3/2c82392761781cd62230a9e229a5f1f06c2e2af25e95c74ecb Successfully built apstools Installing collected packages: apstools Successfully installed apstools-1.1.17rc3 Resource usage statistics from building apstools: Process count: 3 CPU time: Sys=0:00:00.1, User=0:00:00.7 Memory: 62.2M Disk usage: 6.1K Time elapsed: 0:00:04.1 Packaging apstools INFO:conda_build.build:Packaging apstools INFO conda_build.build:build(1540): Packaging apstools Packaging apstools-1.1.17rc3-py_0 INFO:conda_build.build:Packaging apstools-1.1.17rc3-py_0 INFO conda_build.build:bundle_conda(879): Packaging apstools-1.1.17rc3-py_0 number of files: 35 Fixing permissions Packaged license file. TEST START: /tmp/conda-bld/noarch/apstools-1.1.17rc3-py_0.tar.bz2 Adding in variants from /tmp/tmpctfh_ox1/info/recipe/conda_build_config.yaml INFO:conda_build.variants:Adding in variants from /tmp/tmpctfh_ox1/info/recipe/conda_build_config.yaml INFO conda_build.variants:_combine_spec_dictionaries(189): Adding in variants from /tmp/tmpctfh_ox1/info/recipe/conda_build_config.yaml Renaming work directory, /tmp/conda-bld/apstools_1580510273746/work to /tmp/conda-bld/apstools_1580510273746/work_moved_apstools-1.1.17rc3-py_0_noarch Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /tmp/conda-bld/apstools_1580510273746/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place The following NEW packages will be INSTALLED: _libgcc_mutex: 0.1-main apstools: 1.1.17rc3-py_0 local asn1crypto: 1.3.0-py37_0 asteval: 0.9.16-pyh5ca1d4c_0 conda-forge attrs: 19.3.0-py_0 backcall: 0.1.0-py37_0 blas: 1.0-mkl bluesky: 1.5.5-py_0 conda-forge boltons: 20.0.0-py_0 conda-forge ca-certificates: 2020.1.1-0 certifi: 2019.11.28-py37_0 cffi: 1.13.2-py37h2e261b9_0 chardet: 3.0.4-py37_1003 cryptography: 2.8-py37h1ba5d50_0 cycler: 0.10.0-py37_0 cytoolz: 0.10.1-py37h7b6447c_0 databroker: 0.13.3-py_0 conda-forge dbus: 1.13.12-h746ee38_0 decorator: 4.4.1-py_0 doct: 1.1.0-py_0 conda-forge enum34: 1.1.6-py37_1002 conda-forge event-model: 1.13.2-py_0 conda-forge expat: 2.2.6-he6710b0_0 fontconfig: 2.13.0-h9420a91_0 freetype: 2.9.1-h8a8886c_1 glib: 2.63.1-h5a9c865_0 gst-plugins-base: 1.14.0-hbbd80ab_1 gstreamer: 1.14.0-hb453b48_1 h5py: 2.10.0-py37h7918eee_0 hdf5: 1.10.4-hb1b8bf9_0 historydict: 1.2.3-py_0 conda-forge humanize: 0.5.1-py37_1 icu: 58.2-h9c2bf20_1 idna: 2.8-py37_0 imagecodecs-lite: 2019.12.3-py37h516909a_0 conda-forge importlib_metadata: 1.4.0-py37_0 intel-openmp: 2019.4-243 ipython: 7.11.1-py37h39e3cac_0 ipython_genutils: 0.2.0-py37_0 jedi: 0.16.0-py37_0 jinja2: 2.10.3-py_0 jpeg: 9b-h024ee3a_2 jsonschema: 3.2.0-py37_0 kiwisolver: 1.1.0-py37he6710b0_0 ld_impl_linux-64: 2.33.1-h53a641e_7 libedit: 3.1.20181209-hc058e9b_0 libffi: 3.2.1-hd88cf55_4 libgcc-ng: 9.1.0-hdf63c60_0 libgfortran-ng: 7.3.0-hdf63c60_0 libpng: 1.6.37-hbc83047_0 libsodium: 1.0.16-h1bed415_0 libstdcxx-ng: 9.1.0-hdf63c60_0 libtiff: 4.1.0-h2733197_0 libuuid: 1.0.3-h1bed415_2 libxcb: 1.13-h1bed415_1 libxml2: 2.9.9-hea5a465_1 libxslt: 1.1.33-h7d1a2b0_0 lmfit: 1.0.0-py_0 conda-forge lxml: 4.4.2-py37hefd8a0e_0 markupsafe: 1.1.1-py37h7b6447c_0 matplotlib: 3.1.2-py37_1 matplotlib-base: 3.1.2-py37hef1b27d_1 mkl: 2019.4-243 mkl-service: 2.3.0-py37he904b0f_0 mkl_fft: 1.0.15-py37ha843d7b_0 mkl_random: 1.1.0-py37hd6b4f25_0 mongoquery: 1.3.5-py_0 conda-forge more-itertools: 8.0.2-py_0 ncurses: 6.1-he6710b0_1 networkx: 2.4-py_0 numpy: 1.18.1-py37h4f9e942_0 numpy-base: 1.18.1-py37hde5b4d6_1 olefile: 0.46-py37_0 openssl: 1.1.1d-h7b6447c_3 ophyd: 1.4.0rc3-py_0 lightsource2-tag pandas: 1.0.0-py37h0573a6f_0 parso: 0.6.0-py_0 pathlib: 1.0.1-py37_1 pcre: 8.43-he6710b0_0 pexpect: 4.8.0-py37_0 pickleshare: 0.7.5-py37_0 pillow: 7.0.0-py37hb39fc2d_0 pims: 0.4.1-py_1 conda-forge pip: 20.0.2-py37_1 prettytable: 0.7.2-py_3 conda-forge prompt_toolkit: 3.0.3-py_0 ptyprocess: 0.6.0-py37_0 pycparser: 2.19-py37_0 pyepics: 3.4.0-py37_1 conda-forge pygments: 2.5.2-py_0 pyopenssl: 19.1.0-py37_0 pyparsing: 2.4.6-py_0 pyqt: 5.9.2-py37h05f1152_2 pyresttable: 2020.0.2-py_0 aps-anl-tag pyrsistent: 0.15.7-py37h7b6447c_0 pysocks: 1.7.1-py37_0 python: 3.7.6-h0371630_2 python-dateutil: 2.8.1-py_0 pytz: 2019.3-py_0 pyyaml: 5.2-py37h7b6447c_0 pyzmq: 18.1.0-py37he6710b0_0 qt: 5.9.7-h5867ecd_1 readline: 7.0-h7b6447c_5 requests: 2.22.0-py37_1 scipy: 1.3.2-py37h7c811a0_0 setuptools: 45.1.0-py37_0 sip: 4.19.8-py37hf484d3e_0 six: 1.14.0-py37_0 slicerator: 1.0.0-py_0 conda-forge spec2nexus: 2021.1.7-h39e3cac_0 aps-anl-tag sqlite: 3.30.1-h7b6447c_0 super_state_machine: 2.0.2-py37_1000 conda-forge tifffile: 2019.7.26.2-py37_0 conda-forge tk: 8.6.8-hbc83047_0 toolz: 0.10.0-py_0 tornado: 6.0.3-py37h7b6447c_0 tqdm: 4.42.0-py_0 traitlets: 4.3.3-py37_0 tzlocal: 2.0.0-py37_0 ujson: 1.35-py37h14c3975_0 uncertainties: 3.1.3-py_0 conda-forge urllib3: 1.25.8-py37_0 wcwidth: 0.1.7-py37_0 wheel: 0.34.1-py37_0 xlrd: 1.2.0-py37_0 xz: 5.2.4-h14c3975_4 yaml: 0.1.7-had09818_2 zeromq: 4.3.1-he6710b0_3 zipp: 0.6.0-py_0 zlib: 1.2.11-h7b6447c_3 zstd: 1.3.7-h0b5b093_0 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done export PREFIX=/tmp/conda-bld/apstools_1580510273746/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place export SRC_DIR=/tmp/conda-bld/apstools_1580510273746/test_tmp Traceback (most recent call last): File "/tmp/conda-bld/apstools_1580510273746/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/python3.7/ctypes/__init__.py", line 97, in CFUNCTYPE import: 'apstools' import: 'apstools.synApps' return _c_functype_cache[(restype, argtypes, flags)] KeyError: (None, (,), 1) During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/tmp/conda-bld/apstools_1580510273746/test_tmp/run_test.py", line 5, in import apstools.synApps File "/tmp/conda-bld/apstools_1580510273746/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/python3.7/site-packages/apstools/synApps/__init__.py", line 36, in from .asyn import * File "/tmp/conda-bld/apstools_1580510273746/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/python3.7/site-packages/apstools/synApps/asyn.py", line 25, in from ophyd.device import Component File "/tmp/conda-bld/apstools_1580510273746/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/python3.7/site-packages/ophyd/__init__.py", line 72, in set_cl() File "/tmp/conda-bld/apstools_1580510273746/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/python3.7/site-packages/ophyd/__init__.py", line 22, in set_cl set_cl(c_type, pv_telemetry=pv_telemetry) File "/tmp/conda-bld/apstools_1580510273746/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/python3.7/site-packages/ophyd/__init__.py", line 33, in set_cl from . import _pyepics_shim as shim File "/tmp/conda-bld/apstools_1580510273746/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/python3.7/site-packages/ophyd/_pyepics_shim.py", line 5, in import epics File "/tmp/conda-bld/apstools_1580510273746/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/python3.7/site-packages/epics/__init__.py", line 29, in from . import ca File "/tmp/conda-bld/apstools_1580510273746/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/python3.7/site-packages/epics/ca.py", line 713, in dbr.access_rights_handler_args) File "/tmp/conda-bld/apstools_1580510273746/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/python3.7/site-packages/epics/dbr.py", line 339, in make_callback return ctypes.CFUNCTYPE(None, args)(func) File "/tmp/conda-bld/apstools_1580510273746/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/python3.7/ctypes/__init__.py", line 99, in CFUNCTYPE class CFunctionType(_CFuncPtr): TypeError: item 1 in _argtypes_ passes a struct/union with a bitfield by value, which is unsupported. Tests failed for apstools-1.1.17rc3-py_0.tar.bz2 - moving package to /tmp/conda-bld/broken WARNING:conda_build.build:Tests failed for apstools-1.1.17rc3-py_0.tar.bz2 - moving package to /tmp/conda-bld/broken WARNING conda_build.build:tests_failed(2200): Tests failed for apstools-1.1.17rc3-py_0.tar.bz2 - moving package to /tmp/conda-bld/broken TESTS FAILED: apstools-1.1.17rc3-py_0.tar.bz2 upload to conda CHANNEL: aps-anl-dev Using Anaconda API: https://api.anaconda.org [WARNING] Token warning: expires in 28 days Using "aps-anl-dev" as upload username [ERROR] File "/tmp/conda-bld/noarch/apstools-1.1.17rc3-*_0.tar.bz2" does not exist Using Anaconda API: https://api.anaconda.org [WARNING] Token warning: expires in 28 days Using "prjemian" as upload username [ERROR] File "/tmp/conda-bld/noarch/apstools-1.1.17rc3-*_0.tar.bz2" does not exist ```

prjemian commented 4 years ago

Missing some form of EPICS base? Has not been needed before. Add that to requirements.

prjemian commented 4 years ago

Conda build still failing:

details

``` (bluesky) mintadmin@mint-vm:~/.../eclipse/apstools$ ./publish.sh PACKAGE: apstools RELEASE: 1.1.17rc4 Building for upload to PyPI running sdist running egg_info writing apstools.egg-info/PKG-INFO writing dependency_links to apstools.egg-info/dependency_links.txt writing entry points to apstools.egg-info/entry_points.txt writing requirements to apstools.egg-info/requires.txt writing top-level names to apstools.egg-info/top_level.txt reading manifest file 'apstools.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'apstools.egg-info/SOURCES.txt' running check creating apstools-1.1.17rc4 creating apstools-1.1.17rc4/apstools creating apstools-1.1.17rc4/apstools.egg-info creating apstools-1.1.17rc4/apstools/synApps copying files to apstools-1.1.17rc4... copying CHANGES.rst -> apstools-1.1.17rc4 copying LICENSE.txt -> apstools-1.1.17rc4 copying MANIFEST.in -> apstools-1.1.17rc4 copying README.md -> apstools-1.1.17rc4 copying setup.cfg -> apstools-1.1.17rc4 copying setup.py -> apstools-1.1.17rc4 copying versioneer.py -> apstools-1.1.17rc4 copying apstools/__init__.py -> apstools-1.1.17rc4/apstools copying apstools/_requirements.py -> apstools-1.1.17rc4/apstools copying apstools/_version.py -> apstools-1.1.17rc4/apstools copying apstools/callbacks.py -> apstools-1.1.17rc4/apstools copying apstools/devices.py -> apstools-1.1.17rc4/apstools copying apstools/examples.py -> apstools-1.1.17rc4/apstools copying apstools/filewriters.py -> apstools-1.1.17rc4/apstools copying apstools/plans.py -> apstools-1.1.17rc4/apstools copying apstools/run_snapshot.py -> apstools-1.1.17rc4/apstools copying apstools/run_snapshot_gui.py -> apstools-1.1.17rc4/apstools copying apstools/signals.py -> apstools-1.1.17rc4/apstools copying apstools/snapshot.py -> apstools-1.1.17rc4/apstools copying apstools/suspenders.py -> apstools-1.1.17rc4/apstools copying apstools/textreadonly.py -> apstools-1.1.17rc4/apstools copying apstools/utils.py -> apstools-1.1.17rc4/apstools copying apstools.egg-info/PKG-INFO -> apstools-1.1.17rc4/apstools.egg-info copying apstools.egg-info/SOURCES.txt -> apstools-1.1.17rc4/apstools.egg-info copying apstools.egg-info/dependency_links.txt -> apstools-1.1.17rc4/apstools.egg-info copying apstools.egg-info/entry_points.txt -> apstools-1.1.17rc4/apstools.egg-info copying apstools.egg-info/not-zip-safe -> apstools-1.1.17rc4/apstools.egg-info copying apstools.egg-info/requires.txt -> apstools-1.1.17rc4/apstools.egg-info copying apstools.egg-info/top_level.txt -> apstools-1.1.17rc4/apstools.egg-info copying apstools/synApps/__init__.py -> apstools-1.1.17rc4/apstools/synApps copying apstools/synApps/_common.py -> apstools-1.1.17rc4/apstools/synApps copying apstools/synApps/asyn.py -> apstools-1.1.17rc4/apstools/synApps copying apstools/synApps/busy.py -> apstools-1.1.17rc4/apstools/synApps copying apstools/synApps/calcout.py -> apstools-1.1.17rc4/apstools/synApps copying apstools/synApps/epid.py -> apstools-1.1.17rc4/apstools/synApps copying apstools/synApps/save_data.py -> apstools-1.1.17rc4/apstools/synApps copying apstools/synApps/sscan.py -> apstools-1.1.17rc4/apstools/synApps copying apstools/synApps/swait.py -> apstools-1.1.17rc4/apstools/synApps copying apstools/synApps/transform.py -> apstools-1.1.17rc4/apstools/synApps Writing apstools-1.1.17rc4/setup.cfg UPDATING apstools-1.1.17rc4/apstools/_version.py set apstools-1.1.17rc4/apstools/_version.py to '1.1.17rc4' Creating tar archive removing 'apstools-1.1.17rc4' (and everything under it) running bdist_wheel running build running build_py UPDATING build/lib/apstools/_version.py set build/lib/apstools/_version.py to '1.1.17rc4' installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/apstools copying build/lib/apstools/__init__.py -> build/bdist.linux-x86_64/wheel/apstools copying build/lib/apstools/_version.py -> build/bdist.linux-x86_64/wheel/apstools copying build/lib/apstools/devices.py -> build/bdist.linux-x86_64/wheel/apstools copying build/lib/apstools/examples.py -> build/bdist.linux-x86_64/wheel/apstools copying build/lib/apstools/run_snapshot_gui.py -> build/bdist.linux-x86_64/wheel/apstools copying build/lib/apstools/suspenders.py -> build/bdist.linux-x86_64/wheel/apstools copying build/lib/apstools/utils.py -> build/bdist.linux-x86_64/wheel/apstools copying build/lib/apstools/snapshot.py -> build/bdist.linux-x86_64/wheel/apstools copying build/lib/apstools/signals.py -> build/bdist.linux-x86_64/wheel/apstools creating build/bdist.linux-x86_64/wheel/apstools/synApps copying build/lib/apstools/synApps/__init__.py -> build/bdist.linux-x86_64/wheel/apstools/synApps copying build/lib/apstools/synApps/epid.py -> build/bdist.linux-x86_64/wheel/apstools/synApps copying build/lib/apstools/synApps/busy.py -> build/bdist.linux-x86_64/wheel/apstools/synApps copying build/lib/apstools/synApps/asyn.py -> build/bdist.linux-x86_64/wheel/apstools/synApps copying build/lib/apstools/synApps/swait.py -> build/bdist.linux-x86_64/wheel/apstools/synApps copying build/lib/apstools/synApps/sscan.py -> build/bdist.linux-x86_64/wheel/apstools/synApps copying build/lib/apstools/synApps/save_data.py -> build/bdist.linux-x86_64/wheel/apstools/synApps copying build/lib/apstools/synApps/transform.py -> build/bdist.linux-x86_64/wheel/apstools/synApps copying build/lib/apstools/synApps/calcout.py -> build/bdist.linux-x86_64/wheel/apstools/synApps copying build/lib/apstools/synApps/_common.py -> build/bdist.linux-x86_64/wheel/apstools/synApps copying build/lib/apstools/plans.py -> build/bdist.linux-x86_64/wheel/apstools copying build/lib/apstools/filewriters.py -> build/bdist.linux-x86_64/wheel/apstools copying build/lib/apstools/textreadonly.py -> build/bdist.linux-x86_64/wheel/apstools copying build/lib/apstools/run_snapshot.py -> build/bdist.linux-x86_64/wheel/apstools copying build/lib/apstools/callbacks.py -> build/bdist.linux-x86_64/wheel/apstools copying build/lib/apstools/_requirements.py -> build/bdist.linux-x86_64/wheel/apstools running install_egg_info Copying apstools.egg-info to build/bdist.linux-x86_64/wheel/apstools-1.1.17rc4-py3.7.egg-info running install_scripts adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*") creating build/bdist.linux-x86_64/wheel/apstools-1.1.17rc4.dist-info/WHEEL creating 'dist/apstools-1.1.17rc4-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'apstools/__init__.py' adding 'apstools/_requirements.py' adding 'apstools/_version.py' adding 'apstools/callbacks.py' adding 'apstools/devices.py' adding 'apstools/examples.py' adding 'apstools/filewriters.py' adding 'apstools/plans.py' adding 'apstools/run_snapshot.py' adding 'apstools/run_snapshot_gui.py' adding 'apstools/signals.py' adding 'apstools/snapshot.py' adding 'apstools/suspenders.py' adding 'apstools/textreadonly.py' adding 'apstools/utils.py' adding 'apstools/synApps/__init__.py' adding 'apstools/synApps/_common.py' adding 'apstools/synApps/asyn.py' adding 'apstools/synApps/busy.py' adding 'apstools/synApps/calcout.py' adding 'apstools/synApps/epid.py' adding 'apstools/synApps/save_data.py' adding 'apstools/synApps/sscan.py' adding 'apstools/synApps/swait.py' adding 'apstools/synApps/transform.py' adding 'apstools-1.1.17rc4.dist-info/LICENSE.txt' adding 'apstools-1.1.17rc4.dist-info/METADATA' adding 'apstools-1.1.17rc4.dist-info/WHEEL' adding 'apstools-1.1.17rc4.dist-info/entry_points.txt' adding 'apstools-1.1.17rc4.dist-info/top_level.txt' adding 'apstools-1.1.17rc4.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Uploading distributions to https://upload.pypi.org/legacy/ Uploading apstools-1.1.17rc4-py3-none-any.whl 100%|██████████████████████████████████████████████████████████████████████████████████████████████████| 85.0k/85.0k [00:01<00:00, 54.6kB/s] Uploading apstools-1.1.17rc4.tar.gz 100%|██████████████████████████████████████████████████████████████████████████████████████████████████| 87.3k/87.3k [00:01<00:00, 51.9kB/s] Building for upload to conda No numpy version specified in conda_build_config.yaml. Falling back to default numpy value of 1.11 WARNING:conda_build.metadata:No numpy version specified in conda_build_config.yaml. Falling back to default numpy value of 1.11 Copying /home/mintadmin/Documents/eclipse/apstools to /tmp/conda-bld/apstools_1580511505317/work/ Adding in variants from internal_defaults INFO:conda_build.variants:Adding in variants from internal_defaults Attempting to finalize metadata for apstools INFO:conda_build.metadata:Attempting to finalize metadata for apstools Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done BUILD START: ['apstools-1.1.17rc4-py_0.tar.bz2'] Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /tmp/conda-bld/apstools_1580511505317/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_ The following NEW packages will be INSTALLED: _libgcc_mutex: 0.1-main ca-certificates: 2020.1.1-0 certifi: 2019.11.28-py37_0 ld_impl_linux-64: 2.33.1-h53a641e_7 libedit: 3.1.20181209-hc058e9b_0 libffi: 3.2.1-hd88cf55_4 libgcc-ng: 9.1.0-hdf63c60_0 libstdcxx-ng: 9.1.0-hdf63c60_0 ncurses: 6.1-he6710b0_1 openssl: 1.1.1d-h7b6447c_3 pip: 20.0.2-py37_1 python: 3.7.6-h0371630_2 readline: 7.0-h7b6447c_5 setuptools: 45.1.0-py37_0 sqlite: 3.30.1-h7b6447c_0 tk: 8.6.8-hbc83047_0 wheel: 0.34.1-py37_0 xz: 5.2.4-h14c3975_4 zlib: 1.2.11-h7b6447c_3 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done source tree in: /tmp/conda-bld/apstools_1580511505317/work export PREFIX=/tmp/conda-bld/apstools_1580511505317/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_ export BUILD_PREFIX=/tmp/conda-bld/apstools_1580511505317/_build_env export SRC_DIR=/tmp/conda-bld/apstools_1580511505317/work Processing $SRC_DIR Building wheels for collected packages: apstools Building wheel for apstools (setup.py): started Building wheel for apstools (setup.py): finished with status 'done' Created wheel for apstools: filename=apstools-1.1.17rc4-py3-none-any.whl size=79931 sha256=6fe566cfc28747aa4b7f573dc6fdcd241272714a8691f0752a298ee7db287168 Stored in directory: /tmp/pip-ephem-wheel-cache-u14p1ow5/wheels/ef/93/c0/8e7531f35cdb7ab0d392d4257ff8b446aeb0be9a74ef68dcde Successfully built apstools Installing collected packages: apstools Successfully installed apstools-1.1.17rc4 Resource usage statistics from building apstools: Process count: 3 CPU time: Sys=0:00:00.1, User=0:00:00.5 Memory: 50.7M Disk usage: 6.3K Time elapsed: 0:00:04.1 Packaging apstools INFO:conda_build.build:Packaging apstools INFO conda_build.build:build(1540): Packaging apstools Packaging apstools-1.1.17rc4-py_0 INFO:conda_build.build:Packaging apstools-1.1.17rc4-py_0 INFO conda_build.build:bundle_conda(879): Packaging apstools-1.1.17rc4-py_0 number of files: 35 Fixing permissions Packaged license file. TEST START: /tmp/conda-bld/noarch/apstools-1.1.17rc4-py_0.tar.bz2 Adding in variants from /tmp/tmpgk2vlbfn/info/recipe/conda_build_config.yaml INFO:conda_build.variants:Adding in variants from /tmp/tmpgk2vlbfn/info/recipe/conda_build_config.yaml INFO conda_build.variants:_combine_spec_dictionaries(189): Adding in variants from /tmp/tmpgk2vlbfn/info/recipe/conda_build_config.yaml Renaming work directory, /tmp/conda-bld/apstools_1580511505317/work to /tmp/conda-bld/apstools_1580511505317/work_moved_apstools-1.1.17rc4-py_0_noarch Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /tmp/conda-bld/apstools_1580511505317/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place The following NEW packages will be INSTALLED: _libgcc_mutex: 0.1-main apstools: 1.1.17rc4-py_0 local asn1crypto: 1.3.0-py37_0 asteval: 0.9.16-pyh5ca1d4c_0 conda-forge attrs: 19.3.0-py_0 backcall: 0.1.0-py37_0 blas: 1.0-mkl bluesky: 1.5.5-py_0 conda-forge boltons: 20.0.0-py_0 conda-forge ca-certificates: 2020.1.1-0 certifi: 2019.11.28-py37_0 cffi: 1.13.2-py37h2e261b9_0 chardet: 3.0.4-py37_1003 cryptography: 2.8-py37h1ba5d50_0 cycler: 0.10.0-py37_0 cytoolz: 0.10.1-py37h7b6447c_0 databroker: 0.13.3-py_0 conda-forge dbus: 1.13.12-h746ee38_0 decorator: 4.4.1-py_0 doct: 1.1.0-py_0 conda-forge enum34: 1.1.6-py37_1002 conda-forge epics-base: 3.15.6-he1b5a44_0 conda-forge event-model: 1.13.2-py_0 conda-forge expat: 2.2.6-he6710b0_0 fontconfig: 2.13.0-h9420a91_0 freetype: 2.9.1-h8a8886c_1 glib: 2.63.1-h5a9c865_0 gst-plugins-base: 1.14.0-hbbd80ab_1 gstreamer: 1.14.0-hb453b48_1 h5py: 2.10.0-py37h7918eee_0 hdf5: 1.10.4-hb1b8bf9_0 historydict: 1.2.3-py_0 conda-forge humanize: 0.5.1-py37_1 icu: 58.2-h9c2bf20_1 idna: 2.8-py37_0 imagecodecs-lite: 2019.12.3-py37h516909a_0 conda-forge importlib_metadata: 1.4.0-py37_0 intel-openmp: 2019.4-243 ipython: 7.11.1-py37h39e3cac_0 ipython_genutils: 0.2.0-py37_0 jedi: 0.16.0-py37_0 jinja2: 2.10.3-py_0 jpeg: 9b-h024ee3a_2 jsonschema: 3.2.0-py37_0 kiwisolver: 1.1.0-py37he6710b0_0 ld_impl_linux-64: 2.33.1-h53a641e_7 libedit: 3.1.20181209-hc058e9b_0 libffi: 3.2.1-hd88cf55_4 libgcc-ng: 9.1.0-hdf63c60_0 libgfortran-ng: 7.3.0-hdf63c60_0 libpng: 1.6.37-hbc83047_0 libsodium: 1.0.16-h1bed415_0 libstdcxx-ng: 9.1.0-hdf63c60_0 libtiff: 4.1.0-h2733197_0 libuuid: 1.0.3-h1bed415_2 libxcb: 1.13-h1bed415_1 libxml2: 2.9.9-hea5a465_1 libxslt: 1.1.33-h7d1a2b0_0 lmfit: 1.0.0-py_0 conda-forge lxml: 4.4.2-py37hefd8a0e_0 markupsafe: 1.1.1-py37h7b6447c_0 matplotlib: 3.1.2-py37_1 matplotlib-base: 3.1.2-py37hef1b27d_1 mkl: 2019.4-243 mkl-service: 2.3.0-py37he904b0f_0 mkl_fft: 1.0.15-py37ha843d7b_0 mkl_random: 1.1.0-py37hd6b4f25_0 mongoquery: 1.3.5-py_0 conda-forge more-itertools: 8.0.2-py_0 ncurses: 6.1-he6710b0_1 networkx: 2.4-py_0 numpy: 1.18.1-py37h4f9e942_0 numpy-base: 1.18.1-py37hde5b4d6_1 olefile: 0.46-py37_0 openssl: 1.1.1d-h7b6447c_3 ophyd: 1.4.0rc3-py_0 lightsource2-tag pandas: 1.0.0-py37h0573a6f_0 parso: 0.6.0-py_0 pathlib: 1.0.1-py37_1 pcre: 8.43-he6710b0_0 pexpect: 4.8.0-py37_0 pickleshare: 0.7.5-py37_0 pillow: 7.0.0-py37hb39fc2d_0 pims: 0.4.1-py_1 conda-forge pip: 20.0.2-py37_1 prettytable: 0.7.2-py_3 conda-forge prompt_toolkit: 3.0.3-py_0 ptyprocess: 0.6.0-py37_0 pycparser: 2.19-py37_0 pyepics: 3.4.0-py37_1 conda-forge pygments: 2.5.2-py_0 pyopenssl: 19.1.0-py37_0 pyparsing: 2.4.6-py_0 pyqt: 5.9.2-py37h05f1152_2 pyresttable: 2020.0.2-py_0 aps-anl-tag pyrsistent: 0.15.7-py37h7b6447c_0 pysocks: 1.7.1-py37_0 python: 3.7.6-h0371630_2 python-dateutil: 2.8.1-py_0 pytz: 2019.3-py_0 pyyaml: 5.2-py37h7b6447c_0 pyzmq: 18.1.0-py37he6710b0_0 qt: 5.9.7-h5867ecd_1 readline: 7.0-h7b6447c_5 requests: 2.22.0-py37_1 scipy: 1.3.2-py37h7c811a0_0 setuptools: 45.1.0-py37_0 sip: 4.19.8-py37hf484d3e_0 six: 1.14.0-py37_0 slicerator: 1.0.0-py_0 conda-forge spec2nexus: 2021.1.7-h39e3cac_0 aps-anl-tag sqlite: 3.30.1-h7b6447c_0 super_state_machine: 2.0.2-py37_1000 conda-forge tifffile: 2019.7.26.2-py37_0 conda-forge tk: 8.6.8-hbc83047_0 toolz: 0.10.0-py_0 tornado: 6.0.3-py37h7b6447c_0 tqdm: 4.42.0-py_0 traitlets: 4.3.3-py37_0 tzlocal: 2.0.0-py37_0 ujson: 1.35-py37h14c3975_0 uncertainties: 3.1.3-py_0 conda-forge urllib3: 1.25.8-py37_0 wcwidth: 0.1.7-py37_0 wheel: 0.34.1-py37_0 xlrd: 1.2.0-py37_0 xz: 5.2.4-h14c3975_4 yaml: 0.1.7-had09818_2 zeromq: 4.3.1-he6710b0_3 zipp: 0.6.0-py_0 zlib: 1.2.11-h7b6447c_3 zstd: 1.3.7-h0b5b093_0 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done export PREFIX=/tmp/conda-bld/apstools_1580511505317/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place export SRC_DIR=/tmp/conda-bld/apstools_1580511505317/test_tmp Traceback (most recent call last): File "/tmp/conda-bld/apstools_1580511505317/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/python3.7/ctypes/__init__.py", line 97, in CFUNCTYPE import: 'apstools' import: 'apstools.synApps' return _c_functype_cache[(restype, argtypes, flags)] KeyError: (None, (,), 1) During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/tmp/conda-bld/apstools_1580511505317/test_tmp/run_test.py", line 5, in import apstools.synApps File "/tmp/conda-bld/apstools_1580511505317/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/python3.7/site-packages/apstools/synApps/__init__.py", line 36, in from .asyn import * File "/tmp/conda-bld/apstools_1580511505317/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/python3.7/site-packages/apstools/synApps/asyn.py", line 25, in from ophyd.device import Component File "/tmp/conda-bld/apstools_1580511505317/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/python3.7/site-packages/ophyd/__init__.py", line 72, in set_cl() File "/tmp/conda-bld/apstools_1580511505317/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/python3.7/site-packages/ophyd/__init__.py", line 22, in set_cl set_cl(c_type, pv_telemetry=pv_telemetry) File "/tmp/conda-bld/apstools_1580511505317/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/python3.7/site-packages/ophyd/__init__.py", line 33, in set_cl from . import _pyepics_shim as shim File "/tmp/conda-bld/apstools_1580511505317/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/python3.7/site-packages/ophyd/_pyepics_shim.py", line 5, in import epics File "/tmp/conda-bld/apstools_1580511505317/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/python3.7/site-packages/epics/__init__.py", line 29, in from . import ca File "/tmp/conda-bld/apstools_1580511505317/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/python3.7/site-packages/epics/ca.py", line 713, in dbr.access_rights_handler_args) File "/tmp/conda-bld/apstools_1580511505317/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/python3.7/site-packages/epics/dbr.py", line 339, in make_callback return ctypes.CFUNCTYPE(None, args)(func) File "/tmp/conda-bld/apstools_1580511505317/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/python3.7/ctypes/__init__.py", line 99, in CFUNCTYPE class CFunctionType(_CFuncPtr): TypeError: item 1 in _argtypes_ passes a struct/union with a bitfield by value, which is unsupported. Tests failed for apstools-1.1.17rc4-py_0.tar.bz2 - moving package to /tmp/conda-bld/broken WARNING:conda_build.build:Tests failed for apstools-1.1.17rc4-py_0.tar.bz2 - moving package to /tmp/conda-bld/broken WARNING conda_build.build:tests_failed(2200): Tests failed for apstools-1.1.17rc4-py_0.tar.bz2 - moving package to /tmp/conda-bld/broken TESTS FAILED: apstools-1.1.17rc4-py_0.tar.bz2 upload to conda CHANNEL: aps-anl-dev Using Anaconda API: https://api.anaconda.org [WARNING] Token warning: expires in 28 days Using "aps-anl-dev" as upload username [ERROR] File "/tmp/conda-bld/noarch/apstools-1.1.17rc4-*_0.tar.bz2" does not exist Using Anaconda API: https://api.anaconda.org [WARNING] Token warning: expires in 28 days Using "prjemian" as upload username [ERROR] File "/tmp/conda-bld/noarch/apstools-1.1.17rc4-*_0.tar.bz2" does not exist ```

Not releasing today.

prjemian commented 4 years ago

Requirement of epics-base is a setback:

(/share1/bluesky/conda_envs/bluesky_2020_1) usaxs@usaxscontrol ~/.../profile_bluesky/startup $ pip install apstools==1.1.17rc5
Collecting apstools==1.1.17rc5
  Downloading apstools-1.1.17rc5-py3-none-any.whl (79 kB)
     |████████████████████████████████| 79 kB 2.3 MB/s
Requirement already satisfied: event-model>=1.10 in /share1/bluesky/conda_envs/bluesky_2020_1/lib/python3.7/site-packages (from apstools==1.1.17rc5) (1.13.1)
Requirement already satisfied: jsonschema>3 in /share1/bluesky/conda_envs/bluesky_2020_1/lib/python3.7/site-packages (from apstools==1.1.17rc5) (3.2.0)
Requirement already satisfied: spec2nexus>=2021.1.2 in /share1/bluesky/conda_envs/bluesky_2020_1/lib/python3.7/site-packages (from apstools==1.1.17rc5) (2021.1.7)
Requirement already satisfied: databroker[all] in /share1/bluesky/conda_envs/bluesky_2020_1/lib/python3.7/site-packages (from apstools==1.1.17rc5) (0.13.3)
Requirement already satisfied: pyRestTable in /share1/bluesky/conda_envs/bluesky_2020_1/lib/python3.7/site-packages/pyRestTable-2020.0.2-py3.7.egg (from apstools==1.1.17rc5) (2020.0.2)
Requirement already satisfied: attrs>=17.4.0 in /share1/bluesky/conda_envs/bluesky_2020_1/lib/python3.7/site-packages (from apstools==1.1.17rc5) (19.3.0)
Requirement already satisfied: bluesky in /share1/bluesky/conda_envs/bluesky_2020_1/lib/python3.7/site-packages (from apstools==1.1.17rc5) (1.5.5)
ERROR: Could not find a version that satisfies the requirement epics-base (from apstools==1.1.17rc5) (from versions: none)
ERROR: No matching distribution found for epics-base (from apstools==1.1.17rc5)
prjemian commented 4 years ago

see:

settling now on pip install apstools==1.1.17rc6 for USAXS

prjemian commented 4 years ago

Missing some form of EPICS base? Has not been needed before. Add that to requirements.

See #281

prjemian commented 4 years ago

Noe that in the build referenced by #281, ophyd version of 1.4.0rc3 is used

    ophyd:               1.4.0rc3-py_0                   lightsource2-tag

Also, change channel lightsource2-tag to nsls2forge.

prjemian commented 4 years ago 
(bluesky_2020_1) mintadmin@mint-vm:~/.../eclipse/apstools$ git grep lightsource2
rtd-build-method.rst:    conda install -c lightsource2-tag bluesky ophyd

Does that channel come from the build environment?

(bluesky_2020_1) mintadmin@mint-vm:~/.../eclipse/apstools$ conda info | grep lightsource
                          https://conda.anaconda.org/lightsource2-tag/linux-64
                          https://conda.anaconda.org/lightsource2-tag/noarch
                          https://conda.anaconda.org/lightsource2-dev/linux-64
                          https://conda.anaconda.org/lightsource2-dev/noarch
prjemian commented 4 years ago

Installing a newer epics-base package in the base environment, did not keep the conda build from failing. This is the epics-base installed during the build:

    epics-base:          3.15.6-he1b5a44_0         conda-forge

despite these installed in the build environment:

(bluesky) mintadmin@mint-vm:~/.../eclipse/apstools$ conda list epics
# packages in environment at /home/mintadmin/Apps/anaconda/envs/bluesky:
#
# Name                    Version                   Build  Channel
epics-base                7.0.3.1                 pl526_1    apsu
pyepics                   3.4.0                    py37_1    conda-forge
prjemian commented 4 years ago

Add channel apsu to default channels, before conda-forge and nsls2forge

prjemian commented 4 years ago

failed.

first, try using the package locally, pyepics and epics-base/apsu have troubles about libreadline

~/Apps/anaconda/envs/bluesky/lib/python3.7/site-packages/epics/ca.py in initialize_libca()
    325         libca = load_dll(find_libca())
    326     except Exception as exc:
--> 327         raise ChannelAccessException('loading Epics CA DLL failed: ' + str(exc))
    328 
    329     ca_context = {False:0, True:1}[PREEMPTIVE_CALLBACK]

ChannelAccessException: loading Epics CA DLL failed: libreadline.so.6: cannot open shared object file: No such file or directory

In [4]: exit                                                                                                                                
(bluesky) mintadmin@mint-vm:~/.../eclipse/apstools$ conda list epics
# packages in environment at /home/mintadmin/Apps/anaconda/envs/bluesky:
#
# Name                    Version                   Build  Channel
epics-base                7.0.3.1                 pl526_1    apsu
pyepics                   3.4.0                    py37_1    conda-forge
(bluesky) mintadmin@mint-vm:~/.../eclipse/apstools$ conda list readline
# packages in environment at /home/mintadmin/Apps/anaconda/envs/bluesky:
#
# Name                    Version                   Build  Channel
readline                  7.0                  h7b6447c_5
prjemian commented 4 years ago

@sveseli - Can you rebuild the epics-base 7.0.n conda package for libreadline 7?

prjemian commented 4 years ago

The epics-base package from LCLS-II works locally. Put its conda channel in the build environment. https://anaconda.org/lcls-ii/epics-base

prjemian commented 4 years ago

failed

details

``` (bluesky) mintadmin@mint-vm:~/.../eclipse/apstools$ conda build ./conda-recipe/ No numpy version specified in conda_build_config.yaml. Falling back to default numpy value of 1.11 WARNING:conda_build.metadata:No numpy version specified in conda_build_config.yaml. Falling back to default numpy value of 1.11 Copying /home/mintadmin/Documents/eclipse/apstools to /tmp/conda-bld/apstools_1581292395728/work/ Adding in variants from internal_defaults INFO:conda_build.variants:Adding in variants from internal_defaults Attempting to finalize metadata for apstools INFO:conda_build.metadata:Attempting to finalize metadata for apstools Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done BUILD START: ['apstools-1.1.17rc6+1.ga1700f5-py_0.tar.bz2'] Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /tmp/conda-bld/apstools_1581292395728/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_ The following NEW packages will be INSTALLED: _libgcc_mutex: 0.1-main ca-certificates: 2020.1.1-0 certifi: 2019.11.28-py37_0 ld_impl_linux-64: 2.33.1-h53a641e_7 libedit: 3.1.20181209-hc058e9b_0 libffi: 3.2.1-hd88cf55_4 libgcc-ng: 9.1.0-hdf63c60_0 libstdcxx-ng: 9.1.0-hdf63c60_0 ncurses: 6.1-he6710b0_1 openssl: 1.1.1d-h7b6447c_3 pip: 20.0.2-py37_1 python: 3.7.6-h0371630_2 readline: 7.0-h7b6447c_5 setuptools: 45.1.0-py37_0 sqlite: 3.31.1-h7b6447c_0 tk: 8.6.8-hbc83047_0 wheel: 0.34.2-py37_0 xz: 5.2.4-h14c3975_4 zlib: 1.2.11-h7b6447c_3 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done source tree in: /tmp/conda-bld/apstools_1581292395728/work export PREFIX=/tmp/conda-bld/apstools_1581292395728/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_ export BUILD_PREFIX=/tmp/conda-bld/apstools_1581292395728/_build_env export SRC_DIR=/tmp/conda-bld/apstools_1581292395728/work Processing $SRC_DIR Building wheels for collected packages: apstools Building wheel for apstools (setup.py): started Building wheel for apstools (setup.py): finished with status 'done' Created wheel for apstools: filename=apstools-1.1.17rc6+1.ga1700f5-py3-none-any.whl size=80092 sha256=5a49168338c630aa4c3bd7c146a55e490a51b27f4682d5466e5e6513cd721d61 Stored in directory: /tmp/pip-ephem-wheel-cache-7380yx8d/wheels/1e/7e/9b/ac2e8b2906659631b8227f96a531f2f29da2a14286dc33f438 Successfully built apstools Installing collected packages: apstools Successfully installed apstools-1.1.17rc6+1.ga1700f5 Resource usage statistics from building apstools: Process count: 2 CPU time: Sys=0:00:00.0, User=0:00:00.1 Memory: 17.8M Disk usage: 7.0K Time elapsed: 0:00:04.3 Packaging apstools INFO:conda_build.build:Packaging apstools INFO conda_build.build:build(1540): Packaging apstools Packaging apstools-1.1.17rc6+1.ga1700f5-py_0 INFO:conda_build.build:Packaging apstools-1.1.17rc6+1.ga1700f5-py_0 INFO conda_build.build:bundle_conda(879): Packaging apstools-1.1.17rc6+1.ga1700f5-py_0 number of files: 35 Fixing permissions Packaged license file. Package verification results: ----------------------------- /tmp/tmp_c9oionf/apstools-1.1.17rc6+1.ga1700f5-py_0.tar.bz2: C1105 Found invalid version number in info/index.json TEST START: /tmp/conda-bld/noarch/apstools-1.1.17rc6+1.ga1700f5-py_0.tar.bz2 Adding in variants from /tmp/tmp85153gi1/info/recipe/conda_build_config.yaml INFO:conda_build.variants:Adding in variants from /tmp/tmp85153gi1/info/recipe/conda_build_config.yaml INFO conda_build.variants:_combine_spec_dictionaries(189): Adding in variants from /tmp/tmp85153gi1/info/recipe/conda_build_config.yaml Renaming work directory, /tmp/conda-bld/apstools_1581292395728/work to /tmp/conda-bld/apstools_1581292395728/work_moved_apstools-1.1.17rc6+1.ga1700f5-py_0_noarch Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /tmp/conda-bld/apstools_1581292395728/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place The following NEW packages will be INSTALLED: _libgcc_mutex: 0.1-main apstools: 1.1.17rc6+1.ga1700f5-py_0 local asn1crypto: 1.3.0-py37_0 asteval: 0.9.16-pyh5ca1d4c_0 conda-forge attrs: 19.3.0-py_0 backcall: 0.1.0-py37_0 blas: 1.0-mkl bluesky: 1.5.5-py_0 conda-forge boltons: 20.0.0-py_0 conda-forge ca-certificates: 2020.1.1-0 certifi: 2019.11.28-py37_0 cffi: 1.13.2-py37h2e261b9_0 chardet: 3.0.4-py37_1003 cryptography: 2.8-py37h1ba5d50_0 cycler: 0.10.0-py37_0 cytoolz: 0.10.1-py37h7b6447c_0 databroker: 0.13.3-py_0 conda-forge dbus: 1.13.12-h746ee38_0 decorator: 4.4.1-py_0 doct: 1.1.0-py_0 conda-forge epics-base: 7.0.2.2-0 lcls-ii event-model: 1.13.2-py_0 conda-forge expat: 2.2.6-he6710b0_0 fontconfig: 2.13.0-h9420a91_0 freetype: 2.9.1-h8a8886c_1 glib: 2.63.1-h5a9c865_0 gst-plugins-base: 1.14.0-hbbd80ab_1 gstreamer: 1.14.0-hb453b48_1 h5py: 2.10.0-py37h7918eee_0 hdf5: 1.10.4-hb1b8bf9_0 historydict: 1.2.3-py_0 conda-forge humanize: 0.5.1-py37_1 icu: 58.2-h9c2bf20_1 idna: 2.8-py37_0 importlib_metadata: 1.5.0-py37_0 inflect: 4.1.0-py37_0 intel-openmp: 2020.0-166 ipython: 7.12.0-py37h5ca1d4c_0 ipython_genutils: 0.2.0-py37_0 jaraco.itertools: 5.0.0-py_0 jedi: 0.16.0-py37_0 jinja2: 2.11.1-py_0 jpeg: 9b-h024ee3a_2 jsonschema: 3.2.0-py37_0 kiwisolver: 1.1.0-py37he6710b0_0 ld_impl_linux-64: 2.33.1-h53a641e_7 libedit: 3.1.20181209-hc058e9b_0 libffi: 3.2.1-hd88cf55_4 libgcc-ng: 9.1.0-hdf63c60_0 libgfortran-ng: 7.3.0-hdf63c60_0 libpng: 1.6.37-hbc83047_0 libsodium: 1.0.16-h1bed415_0 libstdcxx-ng: 9.1.0-hdf63c60_0 libtiff: 4.1.0-h2733197_0 libuuid: 1.0.3-h1bed415_2 libxcb: 1.13-h1bed415_1 libxml2: 2.9.9-hea5a465_1 libxslt: 1.1.33-h7d1a2b0_0 lmfit: 1.0.0-py_0 conda-forge lxml: 4.5.0-py37hefd8a0e_0 markupsafe: 1.1.1-py37h7b6447c_0 matplotlib: 3.1.3-py37_0 matplotlib-base: 3.1.3-py37hef1b27d_0 mkl: 2020.0-166 mkl-service: 2.3.0-py37he904b0f_0 mkl_fft: 1.0.15-py37ha843d7b_0 mkl_random: 1.1.0-py37hd6b4f25_0 mongoquery: 1.3.5-py_0 conda-forge more-itertools: 8.2.0-py_0 ncurses: 6.1-he6710b0_1 networkx: 2.4-py_0 numpy: 1.18.1-py37h4f9e942_0 numpy-base: 1.18.1-py37hde5b4d6_1 olefile: 0.46-py37_0 openssl: 1.1.1d-h7b6447c_3 ophyd: 1.4.0rc3-py_0 nsls2forge pandas: 1.0.0-py37h0573a6f_0 parso: 0.6.0-py_0 pcre: 8.43-he6710b0_0 pexpect: 4.8.0-py37_0 pickleshare: 0.7.5-py37_0 pillow: 7.0.0-py37hb39fc2d_0 pims: 0.4.1-py_1 conda-forge pip: 20.0.2-py37_1 prettytable: 0.7.2-py_3 conda-forge prompt_toolkit: 3.0.3-py_0 ptyprocess: 0.6.0-py37_0 pycparser: 2.19-py37_0 pyepics: 3.4.0-py37_1 conda-forge pygments: 2.5.2-py_0 pyopenssl: 19.1.0-py37_0 pyparsing: 2.4.6-py_0 pyqt: 5.9.2-py37h05f1152_2 pyresttable: 2020.0.2-py_0 aps-anl-tag pyrsistent: 0.15.7-py37h7b6447c_0 pysocks: 1.7.1-py37_0 python: 3.7.6-h0371630_2 python-dateutil: 2.8.1-py_0 pytz: 2019.3-py_0 pyyaml: 5.3-py37h7b6447c_0 pyzmq: 18.1.1-py37he6710b0_0 qt: 5.9.7-h5867ecd_1 readline: 7.0-h7b6447c_5 requests: 2.22.0-py37_1 scipy: 1.4.1-py37h0b6359f_0 setuptools: 45.1.0-py37_0 sip: 4.19.8-py37hf484d3e_0 six: 1.14.0-py37_0 slicerator: 1.0.0-py_0 conda-forge spec2nexus: 2021.1.7-h39e3cac_0 aps-anl-tag sqlite: 3.31.1-h7b6447c_0 super_state_machine: 2.0.2-py37_1000 conda-forge tifffile: 2019.7.26-py37hc1659b7_1 conda-forge tk: 8.6.8-hbc83047_0 toolz: 0.10.0-py_0 tornado: 6.0.3-py37h7b6447c_1 tqdm: 4.42.0-py_0 traitlets: 4.3.3-py37_0 tzlocal: 2.0.0-py37_0 ujson: 1.35-py37h14c3975_0 uncertainties: 3.1.2-py37_0 conda-forge urllib3: 1.25.8-py37_0 wcwidth: 0.1.8-py_0 wheel: 0.34.2-py37_0 xlrd: 1.2.0-py37_0 xz: 5.2.4-h14c3975_4 yaml: 0.1.7-had09818_2 zeromq: 4.3.1-he6710b0_3 zipp: 2.1.0-py_0 zlib: 1.2.11-h7b6447c_3 zstd: 1.3.7-h0b5b093_0 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done export PREFIX=/tmp/conda-bld/apstools_1581292395728/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place export SRC_DIR=/tmp/conda-bld/apstools_1581292395728/test_tmp import: 'apstools' import: 'apstools.synApps' Traceback (most recent call last): File "/tmp/conda-bld/apstools_1581292395728/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/python3.7/ctypes/__init__.py", line 97, in CFUNCTYPE return _c_functype_cache[(restype, argtypes, flags)] KeyError: (None, (,), 1) During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/tmp/conda-bld/apstools_1581292395728/test_tmp/run_test.py", line 5, in import apstools.synApps File "/tmp/conda-bld/apstools_1581292395728/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/python3.7/site-packages/apstools/synApps/__init__.py", line 36, in from .asyn import * File "/tmp/conda-bld/apstools_1581292395728/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/python3.7/site-packages/apstools/synApps/asyn.py", line 25, in from ophyd.device import Component File "/tmp/conda-bld/apstools_1581292395728/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/python3.7/site-packages/ophyd/__init__.py", line 72, in set_cl() File "/tmp/conda-bld/apstools_1581292395728/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/python3.7/site-packages/ophyd/__init__.py", line 22, in set_cl set_cl(c_type, pv_telemetry=pv_telemetry) File "/tmp/conda-bld/apstools_1581292395728/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/python3.7/site-packages/ophyd/__init__.py", line 33, in set_cl from . import _pyepics_shim as shim File "/tmp/conda-bld/apstools_1581292395728/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/python3.7/site-packages/ophyd/_pyepics_shim.py", line 5, in import epics File "/tmp/conda-bld/apstools_1581292395728/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/python3.7/site-packages/epics/__init__.py", line 29, in from . import ca File "/tmp/conda-bld/apstools_1581292395728/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/python3.7/site-packages/epics/ca.py", line 713, in dbr.access_rights_handler_args) File "/tmp/conda-bld/apstools_1581292395728/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/python3.7/site-packages/epics/dbr.py", line 339, in make_callback return ctypes.CFUNCTYPE(None, args)(func) File "/tmp/conda-bld/apstools_1581292395728/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/python3.7/ctypes/__init__.py", line 99, in CFUNCTYPE class CFunctionType(_CFuncPtr): TypeError: item 1 in _argtypes_ passes a struct/union with a bitfield by value, which is unsupported. Tests failed for apstools-1.1.17rc6+1.ga1700f5-py_0.tar.bz2 - moving package to /tmp/conda-bld/broken WARNING:conda_build.build:Tests failed for apstools-1.1.17rc6+1.ga1700f5-py_0.tar.bz2 - moving package to /tmp/conda-bld/broken WARNING conda_build.build:tests_failed(2200): Tests failed for apstools-1.1.17rc6+1.ga1700f5-py_0.tar.bz2 - moving package to /tmp/conda-bld/broken TESTS FAILED: apstools-1.1.17rc6+1.ga1700f5-py_0.tar.bz2 ```

prjemian commented 4 years ago

but local use works:

(bluesky) mintadmin@mint-vm:~/.../eclipse/apstools$ ipython
Python 3.7.4 (default, Aug 13 2019, 20:35:49) 
Type 'copyright', 'credits' or 'license' for more information
IPython 7.12.0 -- An enhanced Interactive Python. Type '?' for help.

In [1]: import epics                                                                                                                        

In [2]: epics.caget("sky:m1")                                                                                                               
Out[2]: 0.12564889807620153

In [3]: !conda list epics                                                                                                                   
# packages in environment at /home/mintadmin/Apps/anaconda/envs/bluesky:
#
# Name                    Version                   Build  Channel
epics-base                7.0.2.2                       0    lcls-ii
pyepics                   3.4.0                    py37_1    conda-forge
prjemian commented 4 years ago

There's a problem with Python 3.7.6 and PyEpics 3.4.0. We've got that combination here. PyEpics has a newer release: 3.4.1.

prjemian commented 4 years ago

The report to EPICS tech-talk describes our problem EXACTLY.

prjemian commented 4 years ago

Work up a test environment for building this package and test for this bug with:

python -c "import epics; print(epics.caget('sky:m1.DESC'))"

should return

motor 1
prjemian commented 4 years ago

start with:

#!/bin/bash

# create a conda environment to build apstools

export CONDA_ENVIRONMENT=apstools-build
conda create \
    -n ${CONDA_ENVIRONMENT} \
    python=3.7 \
    epics-base \
    "pyepics>=3.4.1"
prjemian commented 4 years ago

complete shell script:

#!/bin/bash

# create a conda environment to build apstools

export CONDA_ENVIRONMENT=apstools-build
conda create \
    -n ${CONDA_ENVIRONMENT} \
    "attrs>=17.4.0" \
    bluesky \
    "databroker[all]" \
    epics-base \
    "event-model>=1.10" \
    historydict \
    "jsonschema>3" \
    "ophyd>=1.4.0rc3" \
    pandas \
    "pyepics>=3.4.1" \
    pyRestTable \
    "python=3.7" \
    "spec2nexus>=2021.1.2" \
    xlrd

# to use this environment:
#   conda activate ${CONDA_ENVIRONMENT}

# to remove this environment:
#   conda env remove -n ${CONDA_ENVIRONMENT}
prjemian commented 4 years ago

With that, revise the requirements.txt and meta.yaml files, including version restrictions.

prjemian commented 4 years ago

conda build succeeded! Make a new rc tag and try to publish.

prjemian commented 4 years ago

travis-ci needs some help, as well

prjemian commented 4 years ago

success with the conda-build + publish

prjemian commented 4 years ago

travis-ci:

Collecting epics-base (from -r requirements.txt (line 4))

  Could not find a version that satisfies the requirement epics-base (from -r requirements.txt (line 4)) (from versions: )

No matching distribution found for epics-base (from -r requirements.txt (line 4))
prjemian commented 4 years ago

now, travis-ci builds

test the conda-build (again) to make sure we did not just break it

prjemian commented 4 years ago

Success! Prepare for release 1.1.17.