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BCDA-APS / mdaviz

Data visualization for mda
https://bcda-aps.github.io/mdaviz/
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Catch exception when trying to read corrupted data #157

Open rodolakis opened 3 weeks ago

rodolakis commented 3 weeks ago

Problem with old corrupted data (from 2017 at 29-ID). Need a try except to cash the exception and print the name of the corrupted file.

No MDA files found in the selected folder.
Traceback (most recent call last):
  File "/home/beams3/RODOLAKIS/src/mdaviz/mdaviz/mainwindow.py", line 181, in onFolderSelected
    mda_list = [utils.get_file_info(f) for f in folder_path.glob("*.mda")]
               ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/beams3/RODOLAKIS/src/mdaviz/mdaviz/mainwindow.py", line 181, in <listcomp>
    mda_list = [utils.get_file_info(f) for f in folder_path.glob("*.mda")]
                ^^^^^^^^^^^^^^^^^^^^^^
  File "/home/beams3/RODOLAKIS/src/mdaviz/mdaviz/utils.py", line 74, in get_file_info
    file_data = readMDA(str(file_path))[1]
                ^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/beams3/RODOLAKIS/src/mdaviz/mdaviz/synApps_mdalib/mda.py", line 790, in readMDA
    n = u.unpack_int()      # length of name string
        ^^^^^^^^^^^^^^
  File "/home/beams/RODOLAKIS/.conda/envs/mdaviz/lib/python3.11/xdrlib.py", line 171, in unpack_int
    raise EOFError
EOFError
Aborted (core dumped)