add Xi-CAM to environment creation YAML

[prjemian]

See #57 for problems encountered previously.

[prjemian]

Xi-CAM install

[prjemian]

Without the python=3.7 pin, this install was for py38. This error when starting xicam:

(bluesky_2020_5) prjemian@poof ~/.../use_bluesky/python_installation $ conda activate bluesky_2020_9
(bluesky_2020_9) prjemian@poof ~/.../use_bluesky/python_installation $ xicam
args: ['/home/prjemian/Apps/anaconda/envs/bluesky_2020_9/bin/xicam']
path: ['/home/prjemian/Apps/anaconda/envs/bluesky_2020_9/bin', '/home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python38.zip', '/home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8', '/home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/lib-dynload', '/home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages', '/home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages/pyRestTable-2020.0.2-py3.7.egg', '/home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages/stdlogpj-1.0.3-py3.7.egg']
qt.qpa.plugin: Could not load the Qt platform plugin "xcb" in "" even though it was found.
This application failed to start because no Qt platform plugin could be initialized. Reinstalling the application may fix this problem.

Available platform plugins are: eglfs, linuxfb, minimal, minimalegl, offscreen, vnc, wayland-egl, wayland, wayland-xcomposite-egl, wayland-xcomposite-glx, webgl, xcb.

Aborted

conda env create -f environment_2020_9 -n bluesky_2020_9

``` CONDA_ENVIRONMENT: bluesky_2020_9 ACTIVATE: /APSshare/miniconda/x86_64/bin/activate found: /home/prjemian/Apps/anaconda/bin/activate # # environment ------------------------------ Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done Preparing transaction: ...working... done Verifying transaction: ...working... SafetyError: The package for pyqt located at /home/prjemian/Apps/anaconda/pkgs/pyqt-5.9.2-py38h05f1152_4 appears to be corrupted. The path 'plugins/designer/libpyqt5.so' has an incorrect size. reported size: 35656 bytes actual size: 35664 bytes ClobberError: This transaction has incompatible packages due to a shared path. packages: defaults/linux-64::python-3.8.2-hcf32534_0, defaults/linux-64::lazy-object-proxy-1.4.3-py38h7b6447c_0, defaults/linux-64::markupsafe-1.1.1-py38h7b6447c_0, defaults/linux-64::simplejson-3.17.0-py38h7b6447c_0, defaults/linux-64::wrapt-1.11.2-py38h7b6447c_0, defaults/linux-64::gobject-introspection-1.56.1-py38h9a62fa1_2, defaults/linux-64::pyqt-5.9.2-py38h05f1152_4 path: 'lib/python3.8/__pycache__/_sysconfigdata_x86_64_conda_cos6_linux_gnu.cpython-38.pyc' ClobberError: This transaction has incompatible packages due to a shared path. packages: nsls2forge/noarch::hklpy-0.3.14-py_0, conda-forge/noarch::typhos-1.0.2-py_0 path: 'lib/python3.8/site-packages/tests/__init__.py' ClobberError: This transaction has incompatible packages due to a shared path. packages: nsls2forge/noarch::hklpy-0.3.14-py_0, conda-forge/noarch::typhos-1.0.2-py_0 path: 'lib/python3.8/site-packages/tests/__pycache__/__init__.cpython-38.pyc' done Executing transaction: ...working... done Installing pip dependencies: ...working... Ran pip subprocess with arguments: ['/home/prjemian/Apps/anaconda/envs/bluesky_2020_9/bin/python', '-m', 'pip', 'install', '-U', '-r', '/home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt'] Pip subprocess output: Requirement already up-to-date: ipython-genutils==0.2.0 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from -r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 1)) (0.2.0) Collecting sphinx-rtd-theme Using cached sphinx_rtd_theme-0.5.0-py2.py3-none-any.whl (10.8 MB) Requirement already up-to-date: super-state-machine in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from -r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 3)) (2.0.2) Collecting xicam Downloading xicam-2.0.1-py3-none-any.whl (4.0 MB) Requirement already satisfied, skipping upgrade: sphinx in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from sphinx-rtd-theme->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 2)) (3.2.0) Requirement already satisfied, skipping upgrade: six in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from super-state-machine->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 3)) (1.15.0) Requirement already satisfied, skipping upgrade: pyqtgraph==0.10.0 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (0.10.0) Requirement already satisfied, skipping upgrade: qtconsole in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (4.7.5) Collecting PyQt5>=5.9.2 Downloading PyQt5-5.15.0-5.15.0-cp35.cp36.cp37.cp38-abi3-manylinux2014_x86_64.whl (76.6 MB) Requirement already satisfied, skipping upgrade: qdarkstyle in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (2.8.1) Requirement already satisfied, skipping upgrade: databroker>=1.0.0b8 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (1.0.6) Collecting qtmodern Using cached qtmodern-0.2.0-py3-none-any.whl (7.1 kB) Requirement already satisfied, skipping upgrade: appdirs in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (1.4.4) Requirement already satisfied, skipping upgrade: dask in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (2.20.0) Requirement already satisfied, skipping upgrade: distributed in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (2.20.0) Collecting virtualenv Downloading virtualenv-20.0.30-py2.py3-none-any.whl (7.1 MB) Collecting pathlib Using cached pathlib-1.0.1.tar.gz (49 kB) Requirement already satisfied, skipping upgrade: qtpy in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (1.9.0) Requirement already satisfied, skipping upgrade: entrypoints in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (0.3) Requirement already satisfied, skipping upgrade: numpy>=1.16.0 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (1.19.1) Requirement already satisfied, skipping upgrade: requests in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (2.24.0) Collecting astropy Downloading astropy-4.0.1.post1-cp38-cp38-manylinux1_x86_64.whl (6.5 MB) Requirement already satisfied, skipping upgrade: Pygments>=2.0 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from sphinx->sphinx-rtd-theme->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 2)) (2.6.1) Requirement already satisfied, skipping upgrade: packaging in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from sphinx->sphinx-rtd-theme->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 2)) (20.4) Requirement already satisfied, skipping upgrade: sphinxcontrib-htmlhelp in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from sphinx->sphinx-rtd-theme->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 2)) (1.0.3) Requirement already satisfied, skipping upgrade: sphinxcontrib-applehelp in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from sphinx->sphinx-rtd-theme->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 2)) (1.0.2) Requirement already satisfied, skipping upgrade: sphinxcontrib-jsmath in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from sphinx->sphinx-rtd-theme->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 2)) (1.0.1) Requirement already satisfied, skipping upgrade: Jinja2>=2.3 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from sphinx->sphinx-rtd-theme->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 2)) (2.11.2) Requirement already satisfied, skipping upgrade: alabaster<0.8,>=0.7 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from sphinx->sphinx-rtd-theme->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 2)) (0.7.12) Requirement already satisfied, skipping upgrade: imagesize in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from sphinx->sphinx-rtd-theme->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 2)) (1.2.0) Requirement already satisfied, skipping upgrade: sphinxcontrib-devhelp in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from sphinx->sphinx-rtd-theme->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 2)) (1.0.2) Requirement already satisfied, skipping upgrade: sphinxcontrib-serializinghtml in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from sphinx->sphinx-rtd-theme->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 2)) (1.1.4) Requirement already satisfied, skipping upgrade: docutils>=0.12 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from sphinx->sphinx-rtd-theme->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 2)) (0.16) Requirement already satisfied, skipping upgrade: snowballstemmer>=1.1 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from sphinx->sphinx-rtd-theme->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 2)) (2.0.0) Requirement already satisfied, skipping upgrade: setuptools in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from sphinx->sphinx-rtd-theme->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 2)) (49.2.1.post20200807) Requirement already satisfied, skipping upgrade: babel>=1.3 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from sphinx->sphinx-rtd-theme->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 2)) (2.8.0) Requirement already satisfied, skipping upgrade: sphinxcontrib-qthelp in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from sphinx->sphinx-rtd-theme->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 2)) (1.0.3) Requirement already satisfied, skipping upgrade: ipykernel>=4.1 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from qtconsole->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (5.3.4) Requirement already satisfied, skipping upgrade: jupyter-client>=4.1 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from qtconsole->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (6.1.6) Requirement already satisfied, skipping upgrade: pyzmq>=17.1 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from qtconsole->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (19.0.1) Requirement already satisfied, skipping upgrade: jupyter-core in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from qtconsole->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (4.6.3) Requirement already satisfied, skipping upgrade: traitlets in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from qtconsole->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (4.3.3) Collecting PyQt5-sip<13,>=12.8 Downloading PyQt5_sip-12.8.0-cp38-cp38-manylinux1_x86_64.whl (293 kB) Collecting helpdev>=0.6.10 Downloading helpdev-0.7.1-py3-none-any.whl (14 kB) Requirement already satisfied, skipping upgrade: msgpack in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from databroker>=1.0.0b8->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (1.0.0) Requirement already satisfied, skipping upgrade: tifffile!=2019.7.26.2 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from databroker>=1.0.0b8->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (0.15.1) Requirement already satisfied, skipping upgrade: tzlocal in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from databroker>=1.0.0b8->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (2.0.0) Requirement already satisfied, skipping upgrade: pims in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from databroker>=1.0.0b8->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (0.5) Requirement already satisfied, skipping upgrade: pytz in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from databroker>=1.0.0b8->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (2020.1) Requirement already satisfied, skipping upgrade: msgpack-numpy in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from databroker>=1.0.0b8->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (0.4.4.3) Requirement already satisfied, skipping upgrade: humanize in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from databroker>=1.0.0b8->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (0.5.1) Requirement already satisfied, skipping upgrade: suitcase-mongo in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from databroker>=1.0.0b8->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (0.2.0) Requirement already satisfied, skipping upgrade: toolz in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from databroker>=1.0.0b8->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (0.10.0) Requirement already satisfied, skipping upgrade: event-model>=1.14.0 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from databroker>=1.0.0b8->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (1.15.2) Requirement already satisfied, skipping upgrade: xarray in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from databroker>=1.0.0b8->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (0.16.0) Requirement already satisfied, skipping upgrade: cachetools in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from databroker>=1.0.0b8->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (4.1.1) Requirement already satisfied, skipping upgrade: intake>=0.5.5 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from databroker>=1.0.0b8->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (0.6.0) Requirement already satisfied, skipping upgrade: suitcase-msgpack in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from databroker>=1.0.0b8->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (0.2.4) Requirement already satisfied, skipping upgrade: doct in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from databroker>=1.0.0b8->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (1.1.0) Requirement already satisfied, skipping upgrade: mongoquery in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from databroker>=1.0.0b8->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (1.3.4) Requirement already satisfied, skipping upgrade: pandas in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from databroker>=1.0.0b8->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (1.1.0) Requirement already satisfied, skipping upgrade: pyyaml in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from databroker>=1.0.0b8->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (5.3.1) Requirement already satisfied, skipping upgrade: jsonschema in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from databroker>=1.0.0b8->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (3.2.0) Requirement already satisfied, skipping upgrade: pymongo in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from databroker>=1.0.0b8->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (3.11.0) Requirement already satisfied, skipping upgrade: boltons in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from databroker>=1.0.0b8->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (20.2.1) Requirement already satisfied, skipping upgrade: zarr in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from databroker>=1.0.0b8->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (2.3.2) Requirement already satisfied, skipping upgrade: tornado>=6.0.3; python_version >= "3.8" in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from distributed->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (6.0.4) Requirement already satisfied, skipping upgrade: sortedcontainers!=2.0.0,!=2.0.1 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from distributed->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (2.2.2) Requirement already satisfied, skipping upgrade: click>=6.6 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from distributed->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (7.1.2) Requirement already satisfied, skipping upgrade: zict>=0.1.3 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from distributed->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (2.0.0) Requirement already satisfied, skipping upgrade: tblib>=1.6.0 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from distributed->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (1.6.0) Requirement already satisfied, skipping upgrade: psutil>=5.0 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from distributed->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (5.7.0) Requirement already satisfied, skipping upgrade: cloudpickle>=1.3.0 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from distributed->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (1.5.0) Collecting distlib<1,>=0.3.1 Downloading distlib-0.3.1-py2.py3-none-any.whl (335 kB) Collecting filelock<4,>=3.0.0 Using cached filelock-3.0.12-py3-none-any.whl (7.6 kB) Requirement already satisfied, skipping upgrade: chardet<4,>=3.0.2 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from requests->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (3.0.4) Requirement already satisfied, skipping upgrade: certifi>=2017.4.17 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from requests->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (2020.6.20) Requirement already satisfied, skipping upgrade: idna<3,>=2.5 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from requests->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (2.10) Requirement already satisfied, skipping upgrade: urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from requests->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (1.25.10) Requirement already satisfied, skipping upgrade: pyparsing>=2.0.2 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from packaging->sphinx->sphinx-rtd-theme->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 2)) (2.4.7) Requirement already satisfied, skipping upgrade: MarkupSafe>=0.23 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from Jinja2>=2.3->sphinx->sphinx-rtd-theme->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 2)) (1.1.1) Requirement already satisfied, skipping upgrade: ipython>=5.0.0 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from ipykernel>=4.1->qtconsole->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (7.16.1) Requirement already satisfied, skipping upgrade: python-dateutil>=2.1 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from jupyter-client>=4.1->qtconsole->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (2.8.1) Requirement already satisfied, skipping upgrade: decorator in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from traitlets->qtconsole->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (4.4.2) Requirement already satisfied, skipping upgrade: slicerator>=0.9.8 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from pims->databroker>=1.0.0b8->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (1.0.0) Requirement already satisfied, skipping upgrade: fsspec>=0.3.6 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from intake>=0.5.5->databroker>=1.0.0b8->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (0.7.4) Requirement already satisfied, skipping upgrade: suitcase-utils in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from suitcase-msgpack->databroker>=1.0.0b8->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (0.5.3) Requirement already satisfied, skipping upgrade: prettytable in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from doct->databroker>=1.0.0b8->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (0.7.2) Requirement already satisfied, skipping upgrade: pyrsistent>=0.14.0 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from jsonschema->databroker>=1.0.0b8->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (0.16.0) Requirement already satisfied, skipping upgrade: attrs>=17.4.0 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from jsonschema->databroker>=1.0.0b8->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (19.3.0) Requirement already satisfied, skipping upgrade: fasteners in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from zarr->databroker>=1.0.0b8->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (0.15) Requirement already satisfied, skipping upgrade: asciitree in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from zarr->databroker>=1.0.0b8->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (0.3.3) Processing /home/prjemian/.cache/pip/wheels/3e/e7/c7/6dd4baff5095133cd03c550991ca8505b4972aa858122e6031/scandir-1.10.0-cp38-cp38-linux_x86_64.whl Requirement already satisfied, skipping upgrade: numcodecs>=0.6.2 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from zarr->databroker>=1.0.0b8->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (0.6.4) Requirement already satisfied, skipping upgrade: heapdict in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from zict>=0.1.3->distributed->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (1.0.1) Requirement already satisfied, skipping upgrade: pexpect; sys_platform != "win32" in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from ipython>=5.0.0->ipykernel>=4.1->qtconsole->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (4.8.0) Requirement already satisfied, skipping upgrade: prompt-toolkit!=3.0.0,!=3.0.1,<3.1.0,>=2.0.0 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from ipython>=5.0.0->ipykernel>=4.1->qtconsole->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (3.0.5) Requirement already satisfied, skipping upgrade: pickleshare in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from ipython>=5.0.0->ipykernel>=4.1->qtconsole->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (0.7.5) Requirement already satisfied, skipping upgrade: backcall in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from ipython>=5.0.0->ipykernel>=4.1->qtconsole->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (0.2.0) Requirement already satisfied, skipping upgrade: jedi>=0.10 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from ipython>=5.0.0->ipykernel>=4.1->qtconsole->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (0.17.0) Requirement already satisfied, skipping upgrade: monotonic>=0.1 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from fasteners->zarr->databroker>=1.0.0b8->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (1.5) Requirement already satisfied, skipping upgrade: ptyprocess>=0.5 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from pexpect; sys_platform != "win32"->ipython>=5.0.0->ipykernel>=4.1->qtconsole->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (0.6.0) Requirement already satisfied, skipping upgrade: wcwidth in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from prompt-toolkit!=3.0.0,!=3.0.1,<3.1.0,>=2.0.0->ipython>=5.0.0->ipykernel>=4.1->qtconsole->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (0.2.5) Requirement already satisfied, skipping upgrade: parso>=0.7.0 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.8/site-packages (from jedi>=0.10->ipython>=5.0.0->ipykernel>=4.1->qtconsole->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.8ogy7454.requirements.txt (line 4)) (0.8.0) Building wheels for collected packages: pathlib Building wheel for pathlib (setup.py): started Building wheel for pathlib (setup.py): finished with status 'done' Created wheel for pathlib: filename=pathlib-1.0.1-py3-none-any.whl size=14346 sha256=396e110fdaafc93206792af11d7fd8841f292bdf6546c9f1db9d44cd296512de Stored in directory: /home/prjemian/.cache/pip/wheels/59/02/2f/ff4a3e16a518feb111ae1405908094483ef56fec0dfa39e571 Successfully built pathlib Installing collected packages: sphinx-rtd-theme, PyQt5-sip, PyQt5, qtmodern, distlib, filelock, virtualenv, pathlib, astropy, xicam, helpdev, scandir Successfully installed PyQt5-5.15.0 PyQt5-sip-12.8.0 astropy-4.0.1.post1 distlib-0.3.1 filelock-3.0.12 helpdev-0.7.1 pathlib-1.0.1 qtmodern-0.2.0 scandir-1.10.0 sphinx-rtd-theme-0.5.0 virtualenv-20.0.30 xicam-2.0.1 done # # To activate this environment, use # # $ conda activate bluesky_2020_9 # # To deactivate an active environment, use # # $ conda deactivate # ------------------------------ # # conda env 'bluesky_2020_9' created # activate with: conda activate bluesky_2020_9 ```

[prjemian]

With py37 pinned, same situation.

(bluesky_2020_5) prjemian@poof ~/.../use_bluesky/python_installation $ conda activate bluesky_2020_9
(bluesky_2020_9) prjemian@poof ~/.../use_bluesky/python_installation $ xicam
args: ['/home/prjemian/Apps/anaconda/envs/bluesky_2020_9/bin/xicam']
path: ['/home/prjemian/Apps/anaconda/envs/bluesky_2020_9/bin', '/home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python37.zip', '/home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7', '/home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/lib-dynload', '/home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages', '/home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages/pyRestTable-2020.0.2-py3.7.egg', '/home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages/stdlogpj-1.0.3-py3.7.egg']
qt.qpa.plugin: Could not load the Qt platform plugin "xcb" in "" even though it was found.
This application failed to start because no Qt platform plugin could be initialized. Reinstalling the application may fix this problem.

Available platform plugins are: eglfs, linuxfb, minimal, minimalegl, offscreen, vnc, wayland-egl, wayland, wayland-xcomposite-egl, wayland-xcomposite-glx, webgl, xcb.

Aborted

conda env create -f environment_2020_9 -n bluesky_2020_9

``` CONDA_ENVIRONMENT: bluesky_2020_9 ACTIVATE: /APSshare/miniconda/x86_64/bin/activate found: /home/prjemian/Apps/anaconda/bin/activate # # environment ------------------------------ Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done Downloading and Extracting Packages pygobject-3.36.1 | 282 KB | | 0% pygobject-3.36.1 | 282 KB | 5 | 6% pygobject-3.36.1 | 282 KB | ########## | 100% pygobject-3.36.1 | 282 KB | ########## | 100% dask-2.22.0 | 4 KB | | 0% dask-2.22.0 | 4 KB | ########## | 100% dask-2.22.0 | 4 KB | ########## | 100% pymongo-3.11.0 | 1.1 MB | | 0% pymongo-3.11.0 | 1.1 MB | #2 | 12% pymongo-3.11.0 | 1.1 MB | ##### | 50% pymongo-3.11.0 | 1.1 MB | ########## | 100% pymongo-3.11.0 | 1.1 MB | ########## | 100% dask-core-2.22.0 | 591 KB | | 0% dask-core-2.22.0 | 591 KB | ######2 | 62% dask-core-2.22.0 | 591 KB | ########## | 100% dask-core-2.22.0 | 591 KB | ########## | 100% pylint-2.5.3 | 441 KB | | 0% pylint-2.5.3 | 441 KB | #######9 | 80% pylint-2.5.3 | 441 KB | ########## | 100% pandas-1.1.0 | 8.1 MB | | 0% pandas-1.1.0 | 8.1 MB | 4 | 4% pandas-1.1.0 | 8.1 MB | #1 | 12% pandas-1.1.0 | 8.1 MB | #7 | 17% pandas-1.1.0 | 8.1 MB | ##6 | 27% pandas-1.1.0 | 8.1 MB | ###4 | 34% pandas-1.1.0 | 8.1 MB | ####1 | 42% pandas-1.1.0 | 8.1 MB | ####9 | 49% pandas-1.1.0 | 8.1 MB | #####6 | 56% pandas-1.1.0 | 8.1 MB | ######5 | 66% pandas-1.1.0 | 8.1 MB | #######3 | 73% pandas-1.1.0 | 8.1 MB | ######## | 81% pandas-1.1.0 | 8.1 MB | ########8 | 88% pandas-1.1.0 | 8.1 MB | #########5 | 96% pandas-1.1.0 | 8.1 MB | ########## | 100% hkl-5.0.0.2173 | 134 KB | | 0% hkl-5.0.0.2173 | 134 KB | #1 | 12% hkl-5.0.0.2173 | 134 KB | ########## | 100% hkl-5.0.0.2173 | 134 KB | ########## | 100% pip-20.2.2 | 1.8 MB | | 0% pip-20.2.2 | 1.8 MB | ## | 20% pip-20.2.2 | 1.8 MB | #####6 | 56% pip-20.2.2 | 1.8 MB | ######### | 91% pip-20.2.2 | 1.8 MB | ########## | 100% imagecodecs-lite-201 | 188 KB | | 0% imagecodecs-lite-201 | 188 KB | ##### | 51% imagecodecs-lite-201 | 188 KB | ########## | 100% distributed-2.22.0 | 1004 KB | | 0% distributed-2.22.0 | 1004 KB | ###8 | 38% distributed-2.22.0 | 1004 KB | ########6 | 86% distributed-2.22.0 | 1004 KB | ########## | 100% typed-ast-1.4.1 | 183 KB | | 0% typed-ast-1.4.1 | 183 KB | ########## | 100% typed-ast-1.4.1 | 183 KB | ########## | 100% astroid-2.4.2 | 279 KB | | 0% astroid-2.4.2 | 279 KB | ########## | 100% astroid-2.4.2 | 279 KB | ########## | 100% pillow-7.2.0 | 617 KB | | 0% pillow-7.2.0 | 617 KB | ######4 | 65% pillow-7.2.0 | 617 KB | ########## | 100% pillow-7.2.0 | 617 KB | ########## | 100% Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Installing pip dependencies: ...working... Ran pip subprocess with arguments: ['/home/prjemian/Apps/anaconda/envs/bluesky_2020_9/bin/python', '-m', 'pip', 'install', '-U', '-r', '/home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt'] Pip subprocess output: Requirement already up-to-date: ipython-genutils==0.2.0 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from -r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 1)) (0.2.0) Collecting sphinx-rtd-theme Using cached sphinx_rtd_theme-0.5.0-py2.py3-none-any.whl (10.8 MB) Requirement already up-to-date: super-state-machine in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from -r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 3)) (2.0.2) Collecting xicam Using cached xicam-2.0.1-py3-none-any.whl (4.0 MB) Requirement already satisfied, skipping upgrade: sphinx in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from sphinx-rtd-theme->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 2)) (3.2.0) Requirement already satisfied, skipping upgrade: six in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from super-state-machine->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 3)) (1.15.0) Requirement already satisfied, skipping upgrade: entrypoints in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (0.3) Requirement already satisfied, skipping upgrade: requests in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (2.24.0) Collecting virtualenv Using cached virtualenv-20.0.30-py2.py3-none-any.whl (7.1 MB) Requirement already satisfied, skipping upgrade: dask in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (2.22.0) Requirement already satisfied, skipping upgrade: qtpy in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (1.9.0) Requirement already satisfied, skipping upgrade: distributed in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (2.22.0) Requirement already satisfied, skipping upgrade: numpy>=1.16.0 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (1.19.1) Requirement already satisfied, skipping upgrade: qtconsole in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (4.7.5) Requirement already satisfied, skipping upgrade: pyqtgraph==0.10.0 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (0.10.0) Collecting qtmodern Using cached qtmodern-0.2.0-py3-none-any.whl (7.1 kB) Requirement already satisfied, skipping upgrade: databroker>=1.0.0b8 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (1.0.6) Requirement already satisfied, skipping upgrade: qdarkstyle in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (2.8.1) Requirement already satisfied, skipping upgrade: appdirs in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (1.4.4) Collecting PyQt5>=5.9.2 Using cached PyQt5-5.15.0-5.15.0-cp35.cp36.cp37.cp38-abi3-manylinux2014_x86_64.whl (76.6 MB) Processing /home/prjemian/.cache/pip/wheels/6e/96/b8/10037fe231e23970bac58361d7c93571ab983a7bbc55e68550/pathlib-1.0.1-py3-none-any.whl Collecting astropy Using cached astropy-4.0.1.post1-cp37-cp37m-manylinux1_x86_64.whl (6.5 MB) Requirement already satisfied, skipping upgrade: sphinxcontrib-devhelp in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from sphinx->sphinx-rtd-theme->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 2)) (1.0.2) Requirement already satisfied, skipping upgrade: Jinja2>=2.3 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from sphinx->sphinx-rtd-theme->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 2)) (2.11.2) Requirement already satisfied, skipping upgrade: babel>=1.3 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from sphinx->sphinx-rtd-theme->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 2)) (2.8.0) Requirement already satisfied, skipping upgrade: sphinxcontrib-jsmath in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from sphinx->sphinx-rtd-theme->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 2)) (1.0.1) Requirement already satisfied, skipping upgrade: sphinxcontrib-serializinghtml in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from sphinx->sphinx-rtd-theme->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 2)) (1.1.4) Requirement already satisfied, skipping upgrade: sphinxcontrib-applehelp in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from sphinx->sphinx-rtd-theme->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 2)) (1.0.2) Requirement already satisfied, skipping upgrade: imagesize in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from sphinx->sphinx-rtd-theme->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 2)) (1.2.0) Requirement already satisfied, skipping upgrade: docutils>=0.12 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from sphinx->sphinx-rtd-theme->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 2)) (0.16) Requirement already satisfied, skipping upgrade: sphinxcontrib-htmlhelp in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from sphinx->sphinx-rtd-theme->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 2)) (1.0.3) Requirement already satisfied, skipping upgrade: packaging in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from sphinx->sphinx-rtd-theme->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 2)) (20.4) Requirement already satisfied, skipping upgrade: alabaster<0.8,>=0.7 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from sphinx->sphinx-rtd-theme->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 2)) (0.7.12) Requirement already satisfied, skipping upgrade: snowballstemmer>=1.1 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from sphinx->sphinx-rtd-theme->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 2)) (2.0.0) Requirement already satisfied, skipping upgrade: sphinxcontrib-qthelp in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from sphinx->sphinx-rtd-theme->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 2)) (1.0.3) Requirement already satisfied, skipping upgrade: Pygments>=2.0 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from sphinx->sphinx-rtd-theme->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 2)) (2.6.1) Requirement already satisfied, skipping upgrade: setuptools in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from sphinx->sphinx-rtd-theme->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 2)) (49.3.1.post20200810) Requirement already satisfied, skipping upgrade: chardet<4,>=3.0.2 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from requests->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (3.0.4) Requirement already satisfied, skipping upgrade: certifi>=2017.4.17 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from requests->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (2020.6.20) Requirement already satisfied, skipping upgrade: urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from requests->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (1.25.10) Requirement already satisfied, skipping upgrade: idna<3,>=2.5 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from requests->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (2.10) Collecting distlib<1,>=0.3.1 Using cached distlib-0.3.1-py2.py3-none-any.whl (335 kB) Requirement already satisfied, skipping upgrade: importlib-metadata<2,>=0.12; python_version < "3.8" in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from virtualenv->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (1.7.0) Collecting filelock<4,>=3.0.0 Using cached filelock-3.0.12-py3-none-any.whl (7.6 kB) Requirement already satisfied, skipping upgrade: pyyaml in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from dask->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (5.3.1) Requirement already satisfied, skipping upgrade: cloudpickle>=1.5.0 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from distributed->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (1.5.0) Requirement already satisfied, skipping upgrade: msgpack>=0.6.0 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from distributed->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (1.0.0) Requirement already satisfied, skipping upgrade: zict>=0.1.3 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from distributed->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (2.0.0) Requirement already satisfied, skipping upgrade: sortedcontainers!=2.0.0,!=2.0.1 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from distributed->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (2.2.2) Requirement already satisfied, skipping upgrade: toolz>=0.8.2 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from distributed->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (0.10.0) Requirement already satisfied, skipping upgrade: tblib>=1.6.0 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from distributed->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (1.6.0) Requirement already satisfied, skipping upgrade: tornado>=5; python_version < "3.8" in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from distributed->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (6.0.4) Requirement already satisfied, skipping upgrade: click>=6.6 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from distributed->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (7.1.2) Requirement already satisfied, skipping upgrade: psutil>=5.0 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from distributed->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (5.7.0) Requirement already satisfied, skipping upgrade: ipykernel>=4.1 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from qtconsole->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (5.3.4) Requirement already satisfied, skipping upgrade: jupyter-client>=4.1 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from qtconsole->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (6.1.6) Requirement already satisfied, skipping upgrade: jupyter-core in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from qtconsole->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (4.6.3) Requirement already satisfied, skipping upgrade: traitlets in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from qtconsole->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (4.3.3) Requirement already satisfied, skipping upgrade: pyzmq>=17.1 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from qtconsole->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (19.0.1) Requirement already satisfied, skipping upgrade: humanize in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from databroker>=1.0.0b8->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (0.5.1) Requirement already satisfied, skipping upgrade: doct in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from databroker>=1.0.0b8->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (1.1.0) Requirement already satisfied, skipping upgrade: pymongo in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from databroker>=1.0.0b8->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (3.11.0) Requirement already satisfied, skipping upgrade: mongoquery in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from databroker>=1.0.0b8->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (1.3.4) Requirement already satisfied, skipping upgrade: event-model>=1.14.0 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from databroker>=1.0.0b8->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (1.15.2) Requirement already satisfied, skipping upgrade: suitcase-mongo in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from databroker>=1.0.0b8->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (0.2.0) Requirement already satisfied, skipping upgrade: boltons in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from databroker>=1.0.0b8->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (20.2.1) Requirement already satisfied, skipping upgrade: tifffile!=2019.7.26.2 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from databroker>=1.0.0b8->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (0.15.1) Requirement already satisfied, skipping upgrade: intake>=0.5.5 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from databroker>=1.0.0b8->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (0.6.0) Requirement already satisfied, skipping upgrade: jsonschema in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from databroker>=1.0.0b8->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (3.2.0) Requirement already satisfied, skipping upgrade: tzlocal in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from databroker>=1.0.0b8->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (2.0.0) Requirement already satisfied, skipping upgrade: cachetools in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from databroker>=1.0.0b8->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (4.1.1) Requirement already satisfied, skipping upgrade: msgpack-numpy in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from databroker>=1.0.0b8->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (0.4.4.3) Requirement already satisfied, skipping upgrade: zarr in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from databroker>=1.0.0b8->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (2.3.2) Requirement already satisfied, skipping upgrade: pytz in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from databroker>=1.0.0b8->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (2020.1) Requirement already satisfied, skipping upgrade: xarray in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from databroker>=1.0.0b8->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (0.16.0) Requirement already satisfied, skipping upgrade: suitcase-msgpack in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from databroker>=1.0.0b8->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (0.2.4) Requirement already satisfied, skipping upgrade: pims in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from databroker>=1.0.0b8->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (0.5) Requirement already satisfied, skipping upgrade: pandas in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from databroker>=1.0.0b8->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (1.1.0) Collecting helpdev>=0.6.10 Using cached helpdev-0.7.1-py3-none-any.whl (14 kB) Collecting PyQt5-sip<13,>=12.8 Downloading PyQt5_sip-12.8.0-cp37-cp37m-manylinux1_x86_64.whl (283 kB) Requirement already satisfied, skipping upgrade: MarkupSafe>=0.23 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from Jinja2>=2.3->sphinx->sphinx-rtd-theme->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 2)) (1.1.1) Requirement already satisfied, skipping upgrade: pyparsing>=2.0.2 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from packaging->sphinx->sphinx-rtd-theme->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 2)) (2.4.7) Requirement already satisfied, skipping upgrade: zipp>=0.5 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from importlib-metadata<2,>=0.12; python_version < "3.8"->virtualenv->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (3.1.0) Requirement already satisfied, skipping upgrade: heapdict in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from zict>=0.1.3->distributed->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (1.0.1) Requirement already satisfied, skipping upgrade: ipython>=5.0.0 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from ipykernel>=4.1->qtconsole->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (7.17.0) Requirement already satisfied, skipping upgrade: python-dateutil>=2.1 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from jupyter-client>=4.1->qtconsole->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (2.8.1) Requirement already satisfied, skipping upgrade: decorator in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from traitlets->qtconsole->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (4.4.2) Requirement already satisfied, skipping upgrade: prettytable in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from doct->databroker>=1.0.0b8->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (0.7.2) Requirement already satisfied, skipping upgrade: fsspec>=0.3.6 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from intake>=0.5.5->databroker>=1.0.0b8->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (0.7.4) Requirement already satisfied, skipping upgrade: pyrsistent>=0.14.0 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from jsonschema->databroker>=1.0.0b8->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (0.16.0) Requirement already satisfied, skipping upgrade: attrs>=17.4.0 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from jsonschema->databroker>=1.0.0b8->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (19.3.0) Requirement already satisfied, skipping upgrade: numcodecs>=0.6.2 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from zarr->databroker>=1.0.0b8->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (0.6.4) Requirement already satisfied, skipping upgrade: asciitree in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from zarr->databroker>=1.0.0b8->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (0.3.3) Processing /home/prjemian/.cache/pip/wheels/3e/63/83/28b90bed614474858ca1d8c95116b4c13e59ce00f640ea3152/scandir-1.10.0-cp37-cp37m-linux_x86_64.whl Requirement already satisfied, skipping upgrade: fasteners in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from zarr->databroker>=1.0.0b8->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (0.15) Requirement already satisfied, skipping upgrade: suitcase-utils in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from suitcase-msgpack->databroker>=1.0.0b8->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (0.5.3) Requirement already satisfied, skipping upgrade: slicerator>=0.9.8 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from pims->databroker>=1.0.0b8->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (1.0.0) Requirement already satisfied, skipping upgrade: pickleshare in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from ipython>=5.0.0->ipykernel>=4.1->qtconsole->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (0.7.5) Requirement already satisfied, skipping upgrade: prompt-toolkit!=3.0.0,!=3.0.1,<3.1.0,>=2.0.0 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from ipython>=5.0.0->ipykernel>=4.1->qtconsole->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (3.0.5) Requirement already satisfied, skipping upgrade: jedi>=0.10 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from ipython>=5.0.0->ipykernel>=4.1->qtconsole->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (0.17.2) Requirement already satisfied, skipping upgrade: pexpect; sys_platform != "win32" in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from ipython>=5.0.0->ipykernel>=4.1->qtconsole->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (4.8.0) Requirement already satisfied, skipping upgrade: backcall in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from ipython>=5.0.0->ipykernel>=4.1->qtconsole->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (0.2.0) Requirement already satisfied, skipping upgrade: monotonic>=0.1 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from fasteners->zarr->databroker>=1.0.0b8->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (1.5) Requirement already satisfied, skipping upgrade: wcwidth in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from prompt-toolkit!=3.0.0,!=3.0.1,<3.1.0,>=2.0.0->ipython>=5.0.0->ipykernel>=4.1->qtconsole->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (0.2.5) Requirement already satisfied, skipping upgrade: parso<0.8.0,>=0.7.0 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from jedi>=0.10->ipython>=5.0.0->ipykernel>=4.1->qtconsole->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (0.7.0) Requirement already satisfied, skipping upgrade: ptyprocess>=0.5 in /home/prjemian/Apps/anaconda/envs/bluesky_2020_9/lib/python3.7/site-packages (from pexpect; sys_platform != "win32"->ipython>=5.0.0->ipykernel>=4.1->qtconsole->xicam->-r /home/prjemian/Documents/projects/use_bluesky/python_installation/condaenv.s6q93c8d.requirements.txt (line 4)) (0.6.0) Installing collected packages: sphinx-rtd-theme, distlib, filelock, virtualenv, qtmodern, PyQt5-sip, PyQt5, pathlib, astropy, xicam, helpdev, scandir Successfully installed PyQt5-5.15.0 PyQt5-sip-12.8.0 astropy-4.0.1.post1 distlib-0.3.1 filelock-3.0.12 helpdev-0.7.1 pathlib-1.0.1 qtmodern-0.2.0 scandir-1.10.0 sphinx-rtd-theme-0.5.0 virtualenv-20.0.30 xicam-2.0.1 done # # To activate this environment, use # # $ conda activate bluesky_2020_9 # # To deactivate an active environment, use # # $ conda deactivate # ------------------------------ # # conda env 'bluesky_2020_9' created # activate with: conda activate bluesky_2020_9 ```

[prjemian]

What's happening is that the pip install of xicam is replacing the conda install of PyQt. Why?

[prjemian]

Here is what pip decides to install as a result of xicam:

Collecting xicam
Collecting virtualenv
Collecting qtmodern
Collecting PyQt5>=5.9.2
Collecting astropy
Collecting distlib<1,>=0.3.1
Collecting filelock<4,>=3.0.0
Collecting helpdev>=0.6.10
Collecting PyQt5-sip<13,>=12.8

Let's try conda install those with version pins.

[prjemian]

first try just astropy and pyqt>=5.9.2

[prjemian]

Same problem. Xi-CAM installation still breaks other packages. Consider not installing xicam for 2020-9 operations at APS.

[prjemian]

This should be reverted and done on a branch.

[prjemian]

pushing this to the next milestone

[prjemian]

insufficient interest at APS to add this yet