"FutureWarning: Possible nested set at position 772 in file filters/regex/safe/hospital_safe.txt"

BCHSI / philter-ucsf

Open source clinical text de-identification

BSD 3-Clause "New" or "Revised" License

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"FutureWarning: Possible nested set at position 772 in file filters/regex/safe/hospital_safe.txt" #3

Closed kmuenzen closed 4 years ago

tschaffter commented 4 years ago

I also encountered this warning:

$ python3 main.py -i ./data/i2b2_notes/ -o ./data/i2b2_results/ -f ./configs/philter_delta.json --prod=True --outputformat=i2b2
FutureWarning: Possible nested set at position 772 in file filters/regex/safe/hospital_safe.txt
reading text from ./data/i2b2_notes/111-01.txt
reading text from ./data/i2b2_notes/110-04.txt
reading text from ./data/i2b2_notes/110-03.txt
reading text from ./data/i2b2_notes/110-02.txt
reading text from ./data/i2b2_notes/110-01.txt

kmuenzen commented 4 years ago

Resolved by removing extra brackets from hospital_safe.txt