BD2KGenomics / brca-pipeline

This repo is deprecated! Please use https://github.com/BD2KGenomics/brca-exchange
4 stars 3 forks source link

Set columns as follows (see details): #84

Closed melissacline closed 9 years ago

melissacline commented 9 years ago
  1. Gene
  2. HGVS nucleotide - suffix portion only - with the reference transcript listed above the table. See http://arup.utah.edu/database/BRCA/Variants/BRCA1
  3. As above, with the protein changes
  4. BIC Nucleotide and protein - TO BE ADDED LATER
  5. IARC classification (1-5)
  6. IARC pathogenicity text. See http://arup.utah.edu/database/BRCA/Variants/BRCA1
  7. genomic coordinates
  8. Reference allele
  9. Alternate allele

From comments by Mandy Spurdle in Google slides, see https://docs.google.com/presentation/d/1tproSNowE4p6pEsQqVbhbAYjSzGPTHDd1de7wvI3C7Q/edit#slide=id.g65e1aa1aa_26_1

MollyZhang commented 9 years ago

done