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BD2KGenomics / cgcloud

Image and VM management for Jenkins, Spark and Mesos clusters in EC2
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core dump from python code on toil master #81

Closed Jeltje closed 8 years ago

Jeltje commented 8 years ago

Originally reported as BD2KGenomics/toil-scripts#58

I tried it with my varscan code, which worked fine before, and get the same invalid pointer issue.

My setup: cgcloud create-cluster --leader-instance-type m3.medium -t=c3.8xlarge -s 1 --share key_config/ toil

pip list

argparse (1.2.1)
bd2k-python-lib (1.10.dev5)
boto (2.38.0)
cgcloud-core (1.2.2)
cgcloud-jenkins (1.2.2)
cgcloud-lib (1.2.2)
cgcloud-mesos (1.2.2)
cgcloud-toil (1.2.2)
ecdsa (0.13)
Fabric (1.10.2)
paramiko (1.16.0)
pip (1.5.4)
pycrypto (2.6.1)
pycurl (7.19.5.3)
PyYAML (3.11)
s3am (1.0b1.dev30)
setuptools (2.2)
wsgiref (0.1.2)
> echo $CGCLOUD_PLUGINS
cgcloud.toil:cgcloud.jenkins:cgcloud.mesos
hannes-ucsc commented 8 years ago

I'm not convinced that this is a cgcloud issue.

Jeltje commented 8 years ago

Turned out to be an outdated toil master issue