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BD2KGenomics / cgl-docker-lib

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Human_Homo_sapiens/hg38_GENCODE_v23_basic.bed.gz does not exist for BamQC #286

Closed akmorrow13 closed 5 years ago

akmorrow13 commented 5 years ago

https://downloads.sourceforge.net/project/rseqc/BED/Human_Homo_sapiens/hg38_GENCODE_v23_basic.bed.gz does not exist at https://github.com/BD2KGenomics/cgl-docker-lib/blob/master/bamQC/Dockerfile#L18

jvivian commented 5 years ago

@akmorrow13 — Thanks for opening this; I'm assuming this is causing all of the PRs to fail?

akmorrow13 commented 5 years ago

@jvivian yes, this is causing all PRs to fail. I made PR https://github.com/BD2KGenomics/cgl-docker-lib/pull/288 which is a temporary fix bumping to v24, but we may want something more permanent in the future