BD2KGenomics / protect

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Allow user to specify majority #286

Open arkal opened 6 years ago

arkal commented 6 years ago

related to #283

Add indel_majority and snv_majority to indexes in the input yaml. Default is None and the majority is figured out dynamically. If the value is provided and is non-None, assert we have enough callers to meet the majority (n_caller >= majority for each snv, indel) and use this value instead.