Instrument GATK functions (resolves #93)

BD2KGenomics / toil-lib

A common library for functions and tools used in toil-based pipelines

Apache License 2.0

4 stars 7 forks source link

Instrument GATK functions (resolves #93) #94

Closed fnothaft closed 7 years ago

fnothaft commented 7 years ago

Adds timing functions to wrap around GATK processing step calls for benchmarking purposes. Additionally, I've added miscellaneous bugfixes for some of the preprocessing tools.

fnothaft commented 7 years ago

This is good to go from my side. Ping @jvivian for review.

jvivian commented 7 years ago

@fnothaft — Sorry for the delay, flying back to the states this weekend. I'll be back at work by Monday.

fnothaft commented 7 years ago

Np! Thanks @jvivian! Have a good trip.