BD2KGenomics / toil-rnaseq

UC Santa Cruz Computational Genomics Lab's Toil-based RNA-seq pipeline
Apache License 2.0
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docker: Cannot connect to the Docker daemon. Is the docker daemon running on this host?. #149

Closed hmkim closed 6 years ago

hmkim commented 6 years ago

error.txt

Hello,

I have an two account in cluster server.

With one account, toil-rnaseq works well. but with the other account toil-rnaseq didn't work.

Could you check my issue ?

I uploaded error logfile for my issue in above.

I ran the toil-rnaseq on virtualenv enviroment using virtualenv (e.g pip, python2).

Thank you.

jvivian commented 6 years ago

Hi @hmkim ,

The error docker: Cannot connect to the Docker daemon. Is the docker daemon running on this host?. See 'docker run --help'. stems from the account not having Docker privileges. You will need to add the user to the Docker group, otherwise all of the docker commands require sudo, which is not done by default. Link to issue

Cheers, John