Add BAM support to Docker wrapper

BD2KGenomics / toil-rnaseq

UC Santa Cruz Computational Genomics Lab's Toil-based RNA-seq pipeline

Apache License 2.0

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Add BAM support to Docker wrapper #162

Open jvivian opened 5 years ago

jvivian commented 5 years ago

The workflow supports BAM, but the Docker wrapper was never updated to reflect that.

rghu commented 4 years ago

do you suggest a workaround until this change is reflected in the Docker wrapper?

jvivian commented 4 years ago

Hi @rghu — do you have a restriction on running the the python version of the workflow? I'm not actually a big fan of the Docker wrapper (I didn't write the initial wrapper and docker-in-docker is a bit messy).