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BD2KGenomics / toil-rnaseq

UC Santa Cruz Computational Genomics Lab's Toil-based RNA-seq pipeline
Apache License 2.0
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use subprocess zcat instead of python gzip in wrapper.py to speed up pipeline #88

Closed wshands closed 7 years ago

wshands commented 7 years ago

use subprocess zcat instead of python gzip in wrapper.py to speed up pipeline; see example in function process_samples in pipeline.