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BD2KGenomics / toil-scripts

Toil workflows for common genomic pipelines
Apache License 2.0
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Remove duplicated functions in gatk_processing #330

Open jvivian opened 8 years ago

jvivian commented 8 years ago

Exome pipeline #307 has moved functions to the common tool library that can replace the ones in gatk_preprocessing by adding an unsafe flag and expanding docker_call to use inputs and outputs.

jvivian commented 8 years ago

Assigning to @jpfeil based on a discussion we had yesterday.