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BD2KOnFHIR / BLENDINGFHIRandRDF

Source files for Blending FHIR and RDF paper
Apache License 2.0
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Import FHIR Ontology on Protege #6

Open hsolbrig opened 4 years ago

hsolbrig commented 4 years ago

I'm looking to import the FHIR Ontology on Protege. I'm struggling to find out which is the right sequence of files to import .

I've replaced the content of the catalog-v001.xml with the content of catalog-remote.xml. Then I've tried to import the wrapper.owl in Protege 5.5 through Direct Import --> Import an ontology contained in a local file, but it gave me this errore:

ERROR 11:36:41 An error occurred whilst extracting the Ontology Id from the imported ontology: {} java.lang.NullPointerException: null at org.protege.editor.owl.model.repository.MasterOntologyIDExtractor.getOntologyId(MasterOntologyIDExtractor.java:27) ~[protege-editor-owl.jar:na] at org.protege.editor.owl.ui.ontology.imports.wizard.page.AnticipateOntologyIdPage.checkImport(AnticipateOntologyIdPage.java:109) [protege-editor-owl.jar:na] at org.protege.editor.owl.ui.ontology.imports.wizard.page.AnticipateOntologyIdPage.lambda$new$0(AnticipateOntologyIdPage.java:44) [protege-editor-owl.jar:na] at java.lang.Thread.run(Thread.java:745) ~[na:1.8.0_121] INFO 11:36:45 -------------------- Importing ontology and imports closure --------------------

hsolbrig commented 4 years ago

I just gave it a try on Mac OSX w/ Protege 5.5.0 "out of the box" and it works using the local fhir.ttl -- checking remote now.

Appears to work as well. Can you check to see whether you can access http://build.fhir.org/fhir.ttl directly?

Milena1530 commented 4 years ago

Using the ttl file you linked, I was able to import the ontology. Thank you very much