BDI-pathogens / phyloscanner

Phylogenetics between and within hosts at once, all along the genome.
GNU General Public License v3.0
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Deal with trees with no branch lengths #32

Open mdhall272 opened 6 years ago

mdhall272 commented 6 years ago

Some potential tree input (e.g. RAxML bootstraps) have no branch lengths. At present phyloscannerR cannot deal with these. The easiest solution is to give them arbitrary lengths and warn the user that the reconstruction must be done with k=0.