add define.stage1.analyses

BDI-pathogens / phyloscanner

Phylogenetics between and within hosts at once, all along the genome.

GNU General Public License v3.0

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add define.stage1.analyses #34

Closed olli0601 closed 5 years ago

olli0601 commented 6 years ago

migrating function define.stage1.analyses to phyloscannerR

mdhall272 commented 6 years ago

The "stage 1" nomenclature isn't something that's in the documentation, and possibly and confusingly suggests the two-stage process is essential. Maybe just "assign.batch.numbers"?

mdhall272 commented 5 years ago

Picky as this is, I'd still rather this was named so the naive user would be under no impression that this was a compulsory part of a basic analysis.

olli0601 commented 5 years ago

Hi Matthew, How about "group.individuals.for.largescale.phyloscanner.analysis"? olli

mdhall272 commented 5 years ago

assign.groups.for.batched.phyloscanner.analysis?

olli0601 commented 5 years ago

sounds great!

mdhall272 commented 5 years ago

Great. Change that and I'll merge.

olli0601 commented 5 years ago

OK I am done