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BDI-pathogens / phyloscanner

Phylogenetics between and within hosts at once, all along the genome.
GNU General Public License v3.0
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new network functions #53

Closed olli0601 closed 5 years ago

olli0601 commented 5 years ago

A few more functions to merge from PhyloscannerRUtilities, all relating to network operations

In transmission.networks.R:

find.pairs.in.networks find.networks find.most.likely.chains.RBGLedmonds (private) In plotting_functions.R:

plot.network plot.chain