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BDRD-Genomics / MAS

Manual Annotation Studio (MAS) is a web server which assists users in the process of identifying coding regions and determining the function of genes.
GNU General Public License v3.0
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conda env build fails with pip install of mod_wsgi #2

Open AdrianForsythe opened 6 months ago

AdrianForsythe commented 6 months ago

Hi there,

I was trying to build the docker image of MAS, but ran into an error with the pip installation of mod_wsi. I have tried to build python 3.5.8 from source with --enable-shared when running the configure script, but I got the same error. Could it be a version issue with mod_wsi and python?

Here is the full dump of the error:

3.460 Channels:
3.460  - bioconda
3.460  - anaconda
3.460  - conda-forge
3.460  - defaults
3.460 Platform: linux-64
3.460 Collecting package metadata (repodata.json): ...working... done
64.13 Solving environment: ...working... done
150.3
150.3 Downloading and Extracting Packages: ...working... done
150.3 Preparing transaction: ...working... done
150.9 Verifying transaction: ...working... done
153.7 Executing transaction: ...working... done
157.7 Installing pip dependencies: ...working... Pip subprocess error:
189.3   ERROR: Command errored out with exit status 1:
189.3    command: /home/daemon/miniconda/envs/mas/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-96plkgmv/mod-wsgi/setup.py'"'"'; __file__='"'"'/tmp/pip-install-96plkgmv/mod-wsgi/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-7btqj1eq
189.3        cwd: /tmp/pip-install-96plkgmv/mod-wsgi/
189.3   Complete output (74 lines):
189.3
189.3   WARNING: The Python installation you are using does not appear to have
189.3   been installed with a shared library, or in the case of MacOS X, as a
189.3   framework. Where these are not present, the compilation of mod_wsgi may
189.3   fail, or if it does succeed, will result in extra memory being used by
189.3   all processes at run time as a result of the static library needing to
189.3   be loaded in its entirety to every process. It is highly recommended
189.3   that you reinstall the Python installation being used from source code,
189.3   supplying the '--enable-shared' option to the 'configure' script when
189.3   configuring the source code prior to building and installing it.
189.3
189.3   /home/daemon/miniconda/envs/mas/lib/python3.8/distutils/dist.py:274: UserWarning: Unknown distribution option: 'bugtrack_url'
189.3     warnings.warn(msg)
189.3   running bdist_wheel
189.3   running build
189.3   running build_py
189.3   creating build
189.3   creating build/lib.linux-x86_64-3.8
189.3   creating build/lib.linux-x86_64-3.8/mod_wsgi
189.3   copying src/__init__.py -> build/lib.linux-x86_64-3.8/mod_wsgi
189.3   creating build/lib.linux-x86_64-3.8/mod_wsgi/server
189.3   copying src/server/apxs_config.py -> build/lib.linux-x86_64-3.8/mod_wsgi/server
189.3   copying src/server/__init__.py -> build/lib.linux-x86_64-3.8/mod_wsgi/server
189.3   copying src/server/environ.py -> build/lib.linux-x86_64-3.8/mod_wsgi/server
189.3   creating build/lib.linux-x86_64-3.8/mod_wsgi/server/management
189.3   copying src/server/management/__init__.py -> build/lib.linux-x86_64-3.8/mod_wsgi/server/management
189.3   creating build/lib.linux-x86_64-3.8/mod_wsgi/server/management/commands
189.3   copying src/server/management/commands/runmodwsgi.py -> build/lib.linux-x86_64-3.8/mod_wsgi/server/management/commands
189.3   copying src/server/management/commands/__init__.py -> build/lib.linux-x86_64-3.8/mod_wsgi/server/management/commands
189.3   creating build/lib.linux-x86_64-3.8/mod_wsgi/docs
189.3   copying docs/_build/html/__init__.py -> build/lib.linux-x86_64-3.8/mod_wsgi/docs
189.3   creating build/lib.linux-x86_64-3.8/mod_wsgi/images
189.3   copying images/__init__.py -> build/lib.linux-x86_64-3.8/mod_wsgi/images
189.3   copying images/snake-whiskey.jpg -> build/lib.linux-x86_64-3.8/mod_wsgi/images
189.3   running build_ext
189.3   building 'mod_wsgi.server.mod_wsgi-py38' extension
189.3   creating build/temp.linux-x86_64-3.8
189.3   creating build/temp.linux-x86_64-3.8/src
189.3   creating build/temp.linux-x86_64-3.8/src/server
189.3   gcc -pthread -B /home/daemon/miniconda/envs/mas/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/usr/local/apache2/include -I/home/daemon/miniconda/envs/mas/include/python3.8 -c src/server/wsgi_metrics.c -o build/temp.linux-x86_64-3.8/src/server/wsgi_metrics.o -I/usr/local/apache2/include -I. -I/usr/include/apr-1.0 -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DLINUX -D_REENTRANT -D_GNU_SOURCE -pipe -g -O2 -ffile-prefix-map=/usr/local/apache2/src=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/apr-1.0 -I/usr/include/apr-1.0 -I/usr/include
189.3   gcc -pthread -B /home/daemon/miniconda/envs/mas/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/usr/local/apache2/include -I/home/daemon/miniconda/envs/mas/include/python3.8 -c src/server/wsgi_restrict.c -o build/temp.linux-x86_64-3.8/src/server/wsgi_restrict.o -I/usr/local/apache2/include -I. -I/usr/include/apr-1.0 -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DLINUX -D_REENTRANT -D_GNU_SOURCE -pipe -g -O2 -ffile-prefix-map=/usr/local/apache2/src=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/apr-1.0 -I/usr/include/apr-1.0 -I/usr/include
189.3   gcc -pthread -B /home/daemon/miniconda/envs/mas/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/usr/local/apache2/include -I/home/daemon/miniconda/envs/mas/include/python3.8 -c src/server/wsgi_logger.c -o build/temp.linux-x86_64-3.8/src/server/wsgi_logger.o -I/usr/local/apache2/include -I. -I/usr/include/apr-1.0 -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DLINUX -D_REENTRANT -D_GNU_SOURCE -pipe -g -O2 -ffile-prefix-map=/usr/local/apache2/src=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/apr-1.0 -I/usr/include/apr-1.0 -I/usr/include
189.3   gcc -pthread -B /home/daemon/miniconda/envs/mas/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/usr/local/apache2/include -I/home/daemon/miniconda/envs/mas/include/python3.8 -c src/server/wsgi_buckets.c -o build/temp.linux-x86_64-3.8/src/server/wsgi_buckets.o -I/usr/local/apache2/include -I. -I/usr/include/apr-1.0 -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DLINUX -D_REENTRANT -D_GNU_SOURCE -pipe -g -O2 -ffile-prefix-map=/usr/local/apache2/src=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/apr-1.0 -I/usr/include/apr-1.0 -I/usr/include
189.3   gcc -pthread -B /home/daemon/miniconda/envs/mas/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/usr/local/apache2/include -I/home/daemon/miniconda/envs/mas/include/python3.8 -c src/server/wsgi_memory.c -o build/temp.linux-x86_64-3.8/src/server/wsgi_memory.o -I/usr/local/apache2/include -I. -I/usr/include/apr-1.0 -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DLINUX -D_REENTRANT -D_GNU_SOURCE -pipe -g -O2 -ffile-prefix-map=/usr/local/apache2/src=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/apr-1.0 -I/usr/include/apr-1.0 -I/usr/include
189.3   gcc -pthread -B /home/daemon/miniconda/envs/mas/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/usr/local/apache2/include -I/home/daemon/miniconda/envs/mas/include/python3.8 -c src/server/wsgi_daemon.c -o build/temp.linux-x86_64-3.8/src/server/wsgi_daemon.o -I/usr/local/apache2/include -I. -I/usr/include/apr-1.0 -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DLINUX -D_REENTRANT -D_GNU_SOURCE -pipe -g -O2 -ffile-prefix-map=/usr/local/apache2/src=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/apr-1.0 -I/usr/include/apr-1.0 -I/usr/include
189.3   gcc -pthread -B /home/daemon/miniconda/envs/mas/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/usr/local/apache2/include -I/home/daemon/miniconda/envs/mas/include/python3.8 -c src/server/wsgi_server.c -o build/temp.linux-x86_64-3.8/src/server/wsgi_server.o -I/usr/local/apache2/include -I. -I/usr/include/apr-1.0 -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DLINUX -D_REENTRANT -D_GNU_SOURCE -pipe -g -O2 -ffile-prefix-map=/usr/local/apache2/src=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/apr-1.0 -I/usr/include/apr-1.0 -I/usr/include
189.3   gcc -pthread -B /home/daemon/miniconda/envs/mas/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/usr/local/apache2/include -I/home/daemon/miniconda/envs/mas/include/python3.8 -c src/server/wsgi_validate.c -o build/temp.linux-x86_64-3.8/src/server/wsgi_validate.o -I/usr/local/apache2/include -I. -I/usr/include/apr-1.0 -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DLINUX -D_REENTRANT -D_GNU_SOURCE -pipe -g -O2 -ffile-prefix-map=/usr/local/apache2/src=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/apr-1.0 -I/usr/include/apr-1.0 -I/usr/include
189.3   gcc -pthread -B /home/daemon/miniconda/envs/mas/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/usr/local/apache2/include -I/home/daemon/miniconda/envs/mas/include/python3.8 -c src/server/mod_wsgi.c -o build/temp.linux-x86_64-3.8/src/server/mod_wsgi.o -I/usr/local/apache2/include -I. -I/usr/include/apr-1.0 -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DLINUX -D_REENTRANT -D_GNU_SOURCE -pipe -g -O2 -ffile-prefix-map=/usr/local/apache2/src=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/apr-1.0 -I/usr/include/apr-1.0 -I/usr/include
189.3   src/server/mod_wsgi.c: In function ‘wsgi_socket_sendv’:
189.3   src/server/mod_wsgi.c:10966:46: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘size_t’ {aka ‘long unsigned int’} due to unsignedness of other operand [-Wsign-compare]
189.3   10966 |                     (nvec < iov_max ? nvec : (int)iov_max));
189.3         |                                              ^~~~~~~~~~~~
189.3   src/server/mod_wsgi.c: In function ‘wsgi_scan_headers’:
189.3   src/server/mod_wsgi.c:11125:23: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘long unsigned int’ due to unsignedness of other operand [-Wsign-compare]
189.3   11125 |     buflen = buffer ? buflen : sizeof(x);
189.3         |                       ^~~~~~
189.3   gcc -pthread -B /home/daemon/miniconda/envs/mas/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/usr/local/apache2/include -I/home/daemon/miniconda/envs/mas/include/python3.8 -c src/server/wsgi_convert.c -o build/temp.linux-x86_64-3.8/src/server/wsgi_convert.o -I/usr/local/apache2/include -I. -I/usr/include/apr-1.0 -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DLINUX -D_REENTRANT -D_GNU_SOURCE -pipe -g -O2 -ffile-prefix-map=/usr/local/apache2/src=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/apr-1.0 -I/usr/include/apr-1.0 -I/usr/include
189.3   gcc -pthread -B /home/daemon/miniconda/envs/mas/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/usr/local/apache2/include -I/home/daemon/miniconda/envs/mas/include/python3.8 -c src/server/wsgi_thread.c -o build/temp.linux-x86_64-3.8/src/server/wsgi_thread.o -I/usr/local/apache2/include -I. -I/usr/include/apr-1.0 -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DLINUX -D_REENTRANT -D_GNU_SOURCE -pipe -g -O2 -ffile-prefix-map=/usr/local/apache2/src=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/apr-1.0 -I/usr/include/apr-1.0 -I/usr/include
189.3   gcc -pthread -B /home/daemon/miniconda/envs/mas/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/usr/local/apache2/include -I/home/daemon/miniconda/envs/mas/include/python3.8 -c src/server/wsgi_interp.c -o build/temp.linux-x86_64-3.8/src/server/wsgi_interp.o -I/usr/local/apache2/include -I. -I/usr/include/apr-1.0 -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DLINUX -D_REENTRANT -D_GNU_SOURCE -pipe -g -O2 -ffile-prefix-map=/usr/local/apache2/src=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/apr-1.0 -I/usr/include/apr-1.0 -I/usr/include
189.3   gcc -pthread -B /home/daemon/miniconda/envs/mas/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/usr/local/apache2/include -I/home/daemon/miniconda/envs/mas/include/python3.8 -c src/server/wsgi_apache.c -o build/temp.linux-x86_64-3.8/src/server/wsgi_apache.o -I/usr/local/apache2/include -I. -I/usr/include/apr-1.0 -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DLINUX -D_REENTRANT -D_GNU_SOURCE -pipe -g -O2 -ffile-prefix-map=/usr/local/apache2/src=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/apr-1.0 -I/usr/include/apr-1.0 -I/usr/include
189.3   gcc -pthread -B /home/daemon/miniconda/envs/mas/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/usr/local/apache2/include -I/home/daemon/miniconda/envs/mas/include/python3.8 -c src/server/wsgi_stream.c -o build/temp.linux-x86_64-3.8/src/server/wsgi_stream.o -I/usr/local/apache2/include -I. -I/usr/include/apr-1.0 -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DLINUX -D_REENTRANT -D_GNU_SOURCE -pipe -g -O2 -ffile-prefix-map=/usr/local/apache2/src=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/apr-1.0 -I/usr/include/apr-1.0 -I/usr/include
189.3   gcc -pthread -shared -B /home/daemon/miniconda/envs/mas/compiler_compat -L/home/daemon/miniconda/envs/mas/lib -Wl,-rpath=/home/daemon/miniconda/envs/mas/lib -Wl,--no-as-needed -Wl,--sysroot=/ build/temp.linux-x86_64-3.8/src/server/wsgi_metrics.o build/temp.linux-x86_64-3.8/src/server/wsgi_restrict.o build/temp.linux-x86_64-3.8/src/server/wsgi_logger.o build/temp.linux-x86_64-3.8/src/server/wsgi_buckets.o build/temp.linux-x86_64-3.8/src/server/wsgi_memory.o build/temp.linux-x86_64-3.8/src/server/wsgi_daemon.o build/temp.linux-x86_64-3.8/src/server/wsgi_server.o build/temp.linux-x86_64-3.8/src/server/wsgi_validate.o build/temp.linux-x86_64-3.8/src/server/mod_wsgi.o build/temp.linux-x86_64-3.8/src/server/wsgi_convert.o build/temp.linux-x86_64-3.8/src/server/wsgi_thread.o build/temp.linux-x86_64-3.8/src/server/wsgi_interp.o build/temp.linux-x86_64-3.8/src/server/wsgi_apache.o build/temp.linux-x86_64-3.8/src/server/wsgi_stream.o -o build/lib.linux-x86_64-3.8/mod_wsgi/server/mod_wsgi-py38.cpython-38-x86_64-linux-gnu.so -L/home/daemon/miniconda/envs/mas/lib -L/home/daemon/miniconda/envs/mas/lib/python3.8/config -lpython3.8
189.3   /home/daemon/miniconda/envs/mas/compiler_compat/ld: /lib/x86_64-linux-gnu/libc.so.6: unknown type [0x13] section `.relr.dyn'
189.3   /home/daemon/miniconda/envs/mas/compiler_compat/ld: skipping incompatible /lib/x86_64-linux-gnu/libc.so.6 when searching for /lib/x86_64-linux-gnu/libc.so.6
189.3   /home/daemon/miniconda/envs/mas/compiler_compat/ld: /lib/x86_64-linux-gnu/libc.so.6: unknown type [0x13] section `.relr.dyn'
189.3   /home/daemon/miniconda/envs/mas/compiler_compat/ld: skipping incompatible /lib/x86_64-linux-gnu/libc.so.6 when searching for /lib/x86_64-linux-gnu/libc.so.6
189.3   /home/daemon/miniconda/envs/mas/compiler_compat/ld: cannot find /lib/x86_64-linux-gnu/libc.so.6
189.3   /home/daemon/miniconda/envs/mas/compiler_compat/ld: /lib64/ld-linux-x86-64.so.2: unknown type [0x13] section `.relr.dyn'
189.3   /home/daemon/miniconda/envs/mas/compiler_compat/ld: skipping incompatible /lib64/ld-linux-x86-64.so.2 when searching for /lib64/ld-linux-x86-64.so.2
189.3   /home/daemon/miniconda/envs/mas/compiler_compat/ld: /lib64/ld-linux-x86-64.so.2: unknown type [0x13] section `.relr.dyn'
189.3   /home/daemon/miniconda/envs/mas/compiler_compat/ld: skipping incompatible /lib64/ld-linux-x86-64.so.2 when searching for /lib64/ld-linux-x86-64.so.2
189.3   /home/daemon/miniconda/envs/mas/compiler_compat/ld: cannot find /lib64/ld-linux-x86-64.so.2
189.3   collect2: error: ld returned 1 exit status
189.3   error: command 'gcc' failed with exit status 1
189.3   ----------------------------------------
189.3   ERROR: Failed building wheel for mod-wsgi
189.3     ERROR: Command errored out with exit status 1:
189.3      command: /home/daemon/miniconda/envs/mas/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-96plkgmv/mod-wsgi/setup.py'"'"'; __file__='"'"'/tmp/pip-install-96plkgmv/mod-wsgi/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-dig3hj_q/install-record.txt --single-version-externally-managed --compile --install-headers /home/daemon/miniconda/envs/mas/include/python3.8/mod-wsgi
189.3          cwd: /tmp/pip-install-96plkgmv/mod-wsgi/
189.3     Complete output (74 lines):
189.3
189.3     WARNING: The Python installation you are using does not appear to have
189.3     been installed with a shared library, or in the case of MacOS X, as a
189.3     framework. Where these are not present, the compilation of mod_wsgi may
189.3     fail, or if it does succeed, will result in extra memory being used by
189.3     all processes at run time as a result of the static library needing to
189.3     be loaded in its entirety to every process. It is highly recommended
189.3     that you reinstall the Python installation being used from source code,
189.3     supplying the '--enable-shared' option to the 'configure' script when
189.3     configuring the source code prior to building and installing it.
189.3
189.3     /home/daemon/miniconda/envs/mas/lib/python3.8/distutils/dist.py:274: UserWarning: Unknown distribution option: 'bugtrack_url'
189.3       warnings.warn(msg)
189.3     running install
189.3     running build
189.3     running build_py
189.3     creating build
189.3     creating build/lib.linux-x86_64-3.8
189.3     creating build/lib.linux-x86_64-3.8/mod_wsgi
189.3     copying src/__init__.py -> build/lib.linux-x86_64-3.8/mod_wsgi
189.3     creating build/lib.linux-x86_64-3.8/mod_wsgi/server
189.3     copying src/server/apxs_config.py -> build/lib.linux-x86_64-3.8/mod_wsgi/server
189.3     copying src/server/__init__.py -> build/lib.linux-x86_64-3.8/mod_wsgi/server
189.3     copying src/server/environ.py -> build/lib.linux-x86_64-3.8/mod_wsgi/server
189.3     creating build/lib.linux-x86_64-3.8/mod_wsgi/server/management
189.3     copying src/server/management/__init__.py -> build/lib.linux-x86_64-3.8/mod_wsgi/server/management
189.3     creating build/lib.linux-x86_64-3.8/mod_wsgi/server/management/commands
189.3     copying src/server/management/commands/runmodwsgi.py -> build/lib.linux-x86_64-3.8/mod_wsgi/server/management/commands
189.3     copying src/server/management/commands/__init__.py -> build/lib.linux-x86_64-3.8/mod_wsgi/server/management/commands
189.3     creating build/lib.linux-x86_64-3.8/mod_wsgi/docs
189.3     copying docs/_build/html/__init__.py -> build/lib.linux-x86_64-3.8/mod_wsgi/docs
189.3     creating build/lib.linux-x86_64-3.8/mod_wsgi/images
189.3     copying images/__init__.py -> build/lib.linux-x86_64-3.8/mod_wsgi/images
189.3     copying images/snake-whiskey.jpg -> build/lib.linux-x86_64-3.8/mod_wsgi/images
189.3     running build_ext
189.3     building 'mod_wsgi.server.mod_wsgi-py38' extension
189.3     creating build/temp.linux-x86_64-3.8
189.3     creating build/temp.linux-x86_64-3.8/src
189.3     creating build/temp.linux-x86_64-3.8/src/server
189.3     gcc -pthread -B /home/daemon/miniconda/envs/mas/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/usr/local/apache2/include -I/home/daemon/miniconda/envs/mas/include/python3.8 -c src/server/wsgi_metrics.c -o build/temp.linux-x86_64-3.8/src/server/wsgi_metrics.o -I/usr/local/apache2/include -I. -I/usr/include/apr-1.0 -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DLINUX -D_REENTRANT -D_GNU_SOURCE -pipe -g -O2 -ffile-prefix-map=/usr/local/apache2/src=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/apr-1.0 -I/usr/include/apr-1.0 -I/usr/include
189.3     gcc -pthread -B /home/daemon/miniconda/envs/mas/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/usr/local/apache2/include -I/home/daemon/miniconda/envs/mas/include/python3.8 -c src/server/wsgi_restrict.c -o build/temp.linux-x86_64-3.8/src/server/wsgi_restrict.o -I/usr/local/apache2/include -I. -I/usr/include/apr-1.0 -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DLINUX -D_REENTRANT -D_GNU_SOURCE -pipe -g -O2 -ffile-prefix-map=/usr/local/apache2/src=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/apr-1.0 -I/usr/include/apr-1.0 -I/usr/include
189.3     gcc -pthread -B /home/daemon/miniconda/envs/mas/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/usr/local/apache2/include -I/home/daemon/miniconda/envs/mas/include/python3.8 -c src/server/wsgi_logger.c -o build/temp.linux-x86_64-3.8/src/server/wsgi_logger.o -I/usr/local/apache2/include -I. -I/usr/include/apr-1.0 -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DLINUX -D_REENTRANT -D_GNU_SOURCE -pipe -g -O2 -ffile-prefix-map=/usr/local/apache2/src=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/apr-1.0 -I/usr/include/apr-1.0 -I/usr/include
189.3     gcc -pthread -B /home/daemon/miniconda/envs/mas/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/usr/local/apache2/include -I/home/daemon/miniconda/envs/mas/include/python3.8 -c src/server/wsgi_buckets.c -o build/temp.linux-x86_64-3.8/src/server/wsgi_buckets.o -I/usr/local/apache2/include -I. -I/usr/include/apr-1.0 -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DLINUX -D_REENTRANT -D_GNU_SOURCE -pipe -g -O2 -ffile-prefix-map=/usr/local/apache2/src=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/apr-1.0 -I/usr/include/apr-1.0 -I/usr/include
189.3     gcc -pthread -B /home/daemon/miniconda/envs/mas/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/usr/local/apache2/include -I/home/daemon/miniconda/envs/mas/include/python3.8 -c src/server/wsgi_memory.c -o build/temp.linux-x86_64-3.8/src/server/wsgi_memory.o -I/usr/local/apache2/include -I. -I/usr/include/apr-1.0 -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DLINUX -D_REENTRANT -D_GNU_SOURCE -pipe -g -O2 -ffile-prefix-map=/usr/local/apache2/src=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/apr-1.0 -I/usr/include/apr-1.0 -I/usr/include
189.3     gcc -pthread -B /home/daemon/miniconda/envs/mas/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/usr/local/apache2/include -I/home/daemon/miniconda/envs/mas/include/python3.8 -c src/server/wsgi_daemon.c -o build/temp.linux-x86_64-3.8/src/server/wsgi_daemon.o -I/usr/local/apache2/include -I. -I/usr/include/apr-1.0 -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DLINUX -D_REENTRANT -D_GNU_SOURCE -pipe -g -O2 -ffile-prefix-map=/usr/local/apache2/src=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/apr-1.0 -I/usr/include/apr-1.0 -I/usr/include
189.3     gcc -pthread -B /home/daemon/miniconda/envs/mas/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/usr/local/apache2/include -I/home/daemon/miniconda/envs/mas/include/python3.8 -c src/server/wsgi_server.c -o build/temp.linux-x86_64-3.8/src/server/wsgi_server.o -I/usr/local/apache2/include -I. -I/usr/include/apr-1.0 -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DLINUX -D_REENTRANT -D_GNU_SOURCE -pipe -g -O2 -ffile-prefix-map=/usr/local/apache2/src=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/apr-1.0 -I/usr/include/apr-1.0 -I/usr/include
189.3     gcc -pthread -B /home/daemon/miniconda/envs/mas/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/usr/local/apache2/include -I/home/daemon/miniconda/envs/mas/include/python3.8 -c src/server/wsgi_validate.c -o build/temp.linux-x86_64-3.8/src/server/wsgi_validate.o -I/usr/local/apache2/include -I. -I/usr/include/apr-1.0 -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DLINUX -D_REENTRANT -D_GNU_SOURCE -pipe -g -O2 -ffile-prefix-map=/usr/local/apache2/src=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/apr-1.0 -I/usr/include/apr-1.0 -I/usr/include
189.3     gcc -pthread -B /home/daemon/miniconda/envs/mas/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/usr/local/apache2/include -I/home/daemon/miniconda/envs/mas/include/python3.8 -c src/server/mod_wsgi.c -o build/temp.linux-x86_64-3.8/src/server/mod_wsgi.o -I/usr/local/apache2/include -I. -I/usr/include/apr-1.0 -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DLINUX -D_REENTRANT -D_GNU_SOURCE -pipe -g -O2 -ffile-prefix-map=/usr/local/apache2/src=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/apr-1.0 -I/usr/include/apr-1.0 -I/usr/include
189.3     src/server/mod_wsgi.c: In function ‘wsgi_socket_sendv’:
189.3     src/server/mod_wsgi.c:10966:46: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘size_t’ {aka ‘long unsigned int’} due to unsignedness of other operand [-Wsign-compare]
189.3     10966 |                     (nvec < iov_max ? nvec : (int)iov_max));
189.3           |                                              ^~~~~~~~~~~~
189.3     src/server/mod_wsgi.c: In function ‘wsgi_scan_headers’:
189.3     src/server/mod_wsgi.c:11125:23: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘long unsigned int’ due to unsignedness of other operand [-Wsign-compare]
189.3     11125 |     buflen = buffer ? buflen : sizeof(x);
189.3           |                       ^~~~~~
189.3     gcc -pthread -B /home/daemon/miniconda/envs/mas/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/usr/local/apache2/include -I/home/daemon/miniconda/envs/mas/include/python3.8 -c src/server/wsgi_convert.c -o build/temp.linux-x86_64-3.8/src/server/wsgi_convert.o -I/usr/local/apache2/include -I. -I/usr/include/apr-1.0 -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DLINUX -D_REENTRANT -D_GNU_SOURCE -pipe -g -O2 -ffile-prefix-map=/usr/local/apache2/src=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/apr-1.0 -I/usr/include/apr-1.0 -I/usr/include
189.3     gcc -pthread -B /home/daemon/miniconda/envs/mas/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/usr/local/apache2/include -I/home/daemon/miniconda/envs/mas/include/python3.8 -c src/server/wsgi_thread.c -o build/temp.linux-x86_64-3.8/src/server/wsgi_thread.o -I/usr/local/apache2/include -I. -I/usr/include/apr-1.0 -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DLINUX -D_REENTRANT -D_GNU_SOURCE -pipe -g -O2 -ffile-prefix-map=/usr/local/apache2/src=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/apr-1.0 -I/usr/include/apr-1.0 -I/usr/include
189.3     gcc -pthread -B /home/daemon/miniconda/envs/mas/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/usr/local/apache2/include -I/home/daemon/miniconda/envs/mas/include/python3.8 -c src/server/wsgi_interp.c -o build/temp.linux-x86_64-3.8/src/server/wsgi_interp.o -I/usr/local/apache2/include -I. -I/usr/include/apr-1.0 -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DLINUX -D_REENTRANT -D_GNU_SOURCE -pipe -g -O2 -ffile-prefix-map=/usr/local/apache2/src=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/apr-1.0 -I/usr/include/apr-1.0 -I/usr/include
189.3     gcc -pthread -B /home/daemon/miniconda/envs/mas/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/usr/local/apache2/include -I/home/daemon/miniconda/envs/mas/include/python3.8 -c src/server/wsgi_apache.c -o build/temp.linux-x86_64-3.8/src/server/wsgi_apache.o -I/usr/local/apache2/include -I. -I/usr/include/apr-1.0 -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DLINUX -D_REENTRANT -D_GNU_SOURCE -pipe -g -O2 -ffile-prefix-map=/usr/local/apache2/src=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/apr-1.0 -I/usr/include/apr-1.0 -I/usr/include
189.3     gcc -pthread -B /home/daemon/miniconda/envs/mas/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/usr/local/apache2/include -I/home/daemon/miniconda/envs/mas/include/python3.8 -c src/server/wsgi_stream.c -o build/temp.linux-x86_64-3.8/src/server/wsgi_stream.o -I/usr/local/apache2/include -I. -I/usr/include/apr-1.0 -I/usr/include -Wdate-time -D_FORTIFY_SOURCE=2 -DLINUX -D_REENTRANT -D_GNU_SOURCE -pipe -g -O2 -ffile-prefix-map=/usr/local/apache2/src=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/apr-1.0 -I/usr/include/apr-1.0 -I/usr/include
189.3     gcc -pthread -shared -B /home/daemon/miniconda/envs/mas/compiler_compat -L/home/daemon/miniconda/envs/mas/lib -Wl,-rpath=/home/daemon/miniconda/envs/mas/lib -Wl,--no-as-needed -Wl,--sysroot=/ build/temp.linux-x86_64-3.8/src/server/wsgi_metrics.o build/temp.linux-x86_64-3.8/src/server/wsgi_restrict.o build/temp.linux-x86_64-3.8/src/server/wsgi_logger.o build/temp.linux-x86_64-3.8/src/server/wsgi_buckets.o build/temp.linux-x86_64-3.8/src/server/wsgi_memory.o build/temp.linux-x86_64-3.8/src/server/wsgi_daemon.o build/temp.linux-x86_64-3.8/src/server/wsgi_server.o build/temp.linux-x86_64-3.8/src/server/wsgi_validate.o build/temp.linux-x86_64-3.8/src/server/mod_wsgi.o build/temp.linux-x86_64-3.8/src/server/wsgi_convert.o build/temp.linux-x86_64-3.8/src/server/wsgi_thread.o build/temp.linux-x86_64-3.8/src/server/wsgi_interp.o build/temp.linux-x86_64-3.8/src/server/wsgi_apache.o build/temp.linux-x86_64-3.8/src/server/wsgi_stream.o -o build/lib.linux-x86_64-3.8/mod_wsgi/server/mod_wsgi-py38.cpython-38-x86_64-linux-gnu.so -L/home/daemon/miniconda/envs/mas/lib -L/home/daemon/miniconda/envs/mas/lib/python3.8/config -lpython3.8
189.3     /home/daemon/miniconda/envs/mas/compiler_compat/ld: /lib/x86_64-linux-gnu/libc.so.6: unknown type [0x13] section `.relr.dyn'
189.3     /home/daemon/miniconda/envs/mas/compiler_compat/ld: skipping incompatible /lib/x86_64-linux-gnu/libc.so.6 when searching for /lib/x86_64-linux-gnu/libc.so.6
189.3     /home/daemon/miniconda/envs/mas/compiler_compat/ld: /lib/x86_64-linux-gnu/libc.so.6: unknown type [0x13] section `.relr.dyn'
189.3     /home/daemon/miniconda/envs/mas/compiler_compat/ld: skipping incompatible /lib/x86_64-linux-gnu/libc.so.6 when searching for /lib/x86_64-linux-gnu/libc.so.6
189.3     /home/daemon/miniconda/envs/mas/compiler_compat/ld: cannot find /lib/x86_64-linux-gnu/libc.so.6
189.3     /home/daemon/miniconda/envs/mas/compiler_compat/ld: /lib64/ld-linux-x86-64.so.2: unknown type [0x13] section `.relr.dyn'
189.3     /home/daemon/miniconda/envs/mas/compiler_compat/ld: skipping incompatible /lib64/ld-linux-x86-64.so.2 when searching for /lib64/ld-linux-x86-64.so.2
189.3     /home/daemon/miniconda/envs/mas/compiler_compat/ld: /lib64/ld-linux-x86-64.so.2: unknown type [0x13] section `.relr.dyn'
189.3     /home/daemon/miniconda/envs/mas/compiler_compat/ld: skipping incompatible /lib64/ld-linux-x86-64.so.2 when searching for /lib64/ld-linux-x86-64.so.2
189.3     /home/daemon/miniconda/envs/mas/compiler_compat/ld: cannot find /lib64/ld-linux-x86-64.so.2
189.3     collect2: error: ld returned 1 exit status
189.3     error: command 'gcc' failed with exit status 1
189.3     ----------------------------------------
189.3 ERROR: Command errored out with exit status 1: /home/daemon/miniconda/envs/mas/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-96plkgmv/mod-wsgi/setup.py'"'"'; __file__='"'"'/tmp/pip-install-96plkgmv/mod-wsgi/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-dig3hj_q/install-record.txt --single-version-externally-managed --compile --install-headers /home/daemon/miniconda/envs/mas/include/python3.8/mod-wsgi Check the logs for full command output.
189.3
189.3 Ran pip subprocess with arguments:
189.3 ['/home/daemon/miniconda/envs/mas/bin/python', '-m', 'pip', 'install', '-U', '-r', '/home/daemon/MAS/container_setup_files/condaenv.7ds0tpx9.requirements.txt', '--exists-action=b']
189.3 Pip subprocess output:
189.3 Collecting asgiref==3.2.10
189.3   Downloading asgiref-3.2.10-py3-none-any.whl (19 kB)
189.3 Collecting chardet==3.0.4
189.3   Downloading chardet-3.0.4-py2.py3-none-any.whl (133 kB)
189.3 Collecting clustergrammer==1.13.6
189.3   Downloading clustergrammer-1.13.6.tar.gz (21 kB)
189.3 Collecting django-crispy-forms==1.9.2
189.3   Downloading django_crispy_forms-1.9.2-py3-none-any.whl (108 kB)
189.3 Collecting django-debug-toolbar==3.1.1
189.3   Downloading django_debug_toolbar-3.1.1-py3-none-any.whl (197 kB)
189.3 Collecting django-simple-history==2.12.0
189.3   Downloading django_simple_history-2.12.0-py2.py3-none-any.whl (46 kB)
189.3 Collecting djangorestframework==3.12.1
189.3   Downloading djangorestframework-3.12.1-py3-none-any.whl (913 kB)
189.3 Collecting docx-mailmerge==0.5.0
189.3   Downloading docx_mailmerge-0.5.0-py2.py3-none-any.whl (9.2 kB)
189.3 Collecting et-xmlfile==1.0.1
189.3   Downloading et_xmlfile-1.0.1.tar.gz (8.4 kB)
189.3 Collecting idna==2.10
189.3   Downloading idna-2.10-py2.py3-none-any.whl (58 kB)
189.3 Collecting lxml==4.6.1
189.3   Downloading lxml-4.6.1-cp38-cp38-manylinux1_x86_64.whl (5.4 MB)
189.3 Collecting requests==2.24.0
189.3   Downloading requests-2.24.0-py2.py3-none-any.whl (61 kB)
189.3 Collecting urllib3==1.25.11
189.3   Downloading urllib3-1.25.11-py2.py3-none-any.whl (127 kB)
189.3 Collecting mod-wsgi==4.7.1
189.3   Downloading mod_wsgi-4.7.1.tar.gz (498 kB)
189.3 Collecting celery==5.0.2
189.3   Downloading celery-5.0.2-py3-none-any.whl (392 kB)
189.3 Collecting luigi==3.0.2
189.3   Downloading luigi-3.0.2.tar.gz (1.2 MB)
189.3 Collecting openpyxl==3.0.5
189.3   Downloading openpyxl-3.0.5-py2.py3-none-any.whl (242 kB)
189.3 Collecting libfaketime==2.0.0
189.3   Downloading libfaketime-2.0.0.tar.gz (84 kB)
189.3 Requirement already satisfied, skipping upgrade: sqlparse>=0.2.0 in /home/daemon/miniconda/envs/mas/lib/python3.8/site-packages (from django-debug-toolbar==3.1.1->-r /home/daemon/MAS/container_setup_files/condaenv.7ds0tpx9.requirements.txt (line 5)) (0.4.1)
189.3 Requirement already satisfied, skipping upgrade: Django>=2.2 in /home/daemon/miniconda/envs/mas/lib/python3.8/site-packages (from django-debug-toolbar==3.1.1->-r /home/daemon/MAS/container_setup_files/condaenv.7ds0tpx9.requirements.txt (line 5)) (3.1.2)
189.3 Requirement already satisfied, skipping upgrade: six in /home/daemon/miniconda/envs/mas/lib/python3.8/site-packages (from django-simple-history==2.12.0->-r /home/daemon/MAS/container_setup_files/condaenv.7ds0tpx9.requirements.txt (line 6)) (1.15.0)
189.3 Requirement already satisfied, skipping upgrade: certifi>=2017.4.17 in /home/daemon/miniconda/envs/mas/lib/python3.8/site-packages (from requests==2.24.0->-r /home/daemon/MAS/container_setup_files/condaenv.7ds0tpx9.requirements.txt (line 12)) (2020.12.5)
189.3 Collecting click>=7.0
189.3   Downloading click-8.1.7-py3-none-any.whl (97 kB)
189.3 Requirement already satisfied, skipping upgrade: pytz>dev in /home/daemon/miniconda/envs/mas/lib/python3.8/site-packages (from celery==5.0.2->-r /home/daemon/MAS/container_setup_files/condaenv.7ds0tpx9.requirements.txt (line 15)) (2020.1)
189.3 Collecting vine<6.0,>=5.0.0
189.3   Downloading vine-5.1.0-py3-none-any.whl (9.6 kB)
189.3 Collecting billiard<4.0,>=3.6.3.0
189.3   Downloading billiard-3.6.4.0-py3-none-any.whl (89 kB)
189.3 Collecting click-repl>=0.1.6
189.3   Downloading click_repl-0.3.0-py3-none-any.whl (10 kB)
189.3 Collecting kombu<6.0,>=5.0.0
189.3   Downloading kombu-5.3.5-py3-none-any.whl (200 kB)
189.3 Collecting click-didyoumean>=0.0.3
189.3   Downloading click_didyoumean-0.3.0-py3-none-any.whl (2.7 kB)
189.3 Requirement already satisfied, skipping upgrade: python-dateutil<3,>=2.7.5 in /home/daemon/miniconda/envs/mas/lib/python3.8/site-packages (from luigi==3.0.2->-r /home/daemon/MAS/container_setup_files/condaenv.7ds0tpx9.requirements.txt (line 16)) (2.8.1)
189.3 Collecting python-daemon
189.3   Downloading python_daemon-3.0.1-py3-none-any.whl (31 kB)
189.3 Collecting tornado<7,>=5.0
189.3   Downloading tornado-6.4-cp38-abi3-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (435 kB)
189.3 Collecting jdcal
189.3   Downloading jdcal-1.4.1-py2.py3-none-any.whl (9.5 kB)
189.3 Collecting prompt-toolkit>=3.0.36
189.3   Downloading prompt_toolkit-3.0.43-py3-none-any.whl (386 kB)
189.3 Collecting backports.zoneinfo[tzdata]>=0.2.1; python_version < "3.9"
189.3   Downloading backports.zoneinfo-0.2.1-cp38-cp38-manylinux1_x86_64.whl (74 kB)
189.3 Collecting typing-extensions; python_version < "3.10"
189.3   Downloading typing_extensions-4.9.0-py3-none-any.whl (32 kB)
189.3 Collecting amqp<6.0.0,>=5.1.1
189.3   Downloading amqp-5.2.0-py3-none-any.whl (50 kB)
189.3 Collecting lockfile>=0.10
189.3   Downloading lockfile-0.12.2-py2.py3-none-any.whl (13 kB)
189.3 Collecting setuptools>=62.4.0
189.3   Downloading setuptools-69.1.0-py3-none-any.whl (819 kB)
189.3 Collecting docutils
189.3   Downloading docutils-0.20.1-py3-none-any.whl (572 kB)
189.3 Collecting wcwidth
189.3   Downloading wcwidth-0.2.13-py2.py3-none-any.whl (34 kB)
189.3 Collecting tzdata; extra == "tzdata"
189.3   Downloading tzdata-2024.1-py2.py3-none-any.whl (345 kB)
189.3 Building wheels for collected packages: clustergrammer, et-xmlfile, mod-wsgi, luigi, libfaketime
189.3   Building wheel for clustergrammer (setup.py): started
189.3   Building wheel for clustergrammer (setup.py): finished with status 'done'
189.3   Created wheel for clustergrammer: filename=clustergrammer-1.13.6-py3-none-any.whl size=29728 sha256=168f999ec8a6ee6bafd4fc8a3dc8eac6a25cc0265dcc8a4beace17fcd2162fe0
189.3   Stored in directory: /home/daemon/.cache/pip/wheels/7e/c8/82/1d2b4bad5a82eaf77cf98ef57e12aac051e998cdde922d115c
189.3   Building wheel for et-xmlfile (setup.py): started
189.3   Building wheel for et-xmlfile (setup.py): finished with status 'done'
189.3   Created wheel for et-xmlfile: filename=et_xmlfile-1.0.1-py3-none-any.whl size=8917 sha256=2bbfc7a0b10af8c8869da114d4e5a7b671973c682f41f396c8372f5280c8c438
189.3   Stored in directory: /home/daemon/.cache/pip/wheels/6e/df/38/abda47b884e3e25f9f9b6430e5ce44c47670758a50c0c51759
189.3   Building wheel for mod-wsgi (setup.py): started
189.3   Building wheel for mod-wsgi (setup.py): finished with status 'error'
189.3   Running setup.py clean for mod-wsgi
189.3   Building wheel for luigi (setup.py): started
189.3   Building wheel for luigi (setup.py): finished with status 'done'
189.3   Created wheel for luigi: filename=luigi-3.0.2-py3-none-any.whl size=1076735 sha256=21acd4fe3301dd16d550c1137784830058f4fd18e9447295caf3f6e5ed9180ff
189.3   Stored in directory: /home/daemon/.cache/pip/wheels/63/e8/69/ebefe4a6af2e876f17e421838274e89c207d43e6156b25c5c3
189.3   Building wheel for libfaketime (setup.py): started
189.3   Building wheel for libfaketime (setup.py): finished with status 'done'
189.3   Created wheel for libfaketime: filename=libfaketime-2.0.0-py3-none-any.whl size=98826 sha256=bccac9d82835ae7e43ce4cb623be70ac96a227c4ce808278b086e650f0654879
189.3   Stored in directory: /home/daemon/.cache/pip/wheels/53/fc/1d/fcdad506abb0552822b328431e7bed0ec0e311ea44c764c986
189.3 Successfully built clustergrammer et-xmlfile luigi libfaketime
189.3 Failed to build mod-wsgi
189.3 Installing collected packages: asgiref, chardet, clustergrammer, django-crispy-forms, django-debug-toolbar, django-simple-history, djangorestframework, lxml, docx-mailmerge, et-xmlfile, idna, urllib3, requests, mod-wsgi, click, vine, billiard, wcwidth, prompt-toolkit, click-repl, tzdata, backports.zoneinfo, typing-extensions, amqp, kombu, click-didyoumean, celery, lockfile, setuptools, docutils, python-daemon, tornado, luigi, jdcal, openpyxl, libfaketime
189.3   Attempting uninstall: asgiref
189.3     Found existing installation: asgiref 3.5.2
189.3     Uninstalling asgiref-3.5.2:
189.3       Successfully uninstalled asgiref-3.5.2
189.3     Running setup.py install for mod-wsgi: started
189.3     Running setup.py install for mod-wsgi: finished with status 'error'
189.3
189.3 failed
189.3
189.3 CondaEnvException: Pip failed
189.3
------
failed to solve: process "/bin/sh -c /home/daemon/miniconda/bin/conda env create --file /home/daemon/MAS/container_setup_files/mas-environment.yml" did not complete successfully: exit code: 1
AdrianForsythe commented 6 months ago

Using an earlier apache version for the parent image in the dockerfile resolves this issue:

FROM httpd:2.4.51