MCMCMC mechanism for creating multiple chains duplicates the entire model

BEAST2-Dev / BEASTLabs

A package for BEAST 2 implementing generally useful stuff

6 stars 4 forks source link

MCMCMC mechanism for creating multiple chains duplicates the entire model #2

Open tgvaughan opened 9 years ago

tgvaughan commented 9 years ago

This makes it impossible to use references to BEASTObjects as keys, even when those BEASTObjects represent things like a Taxon or Locus.

Maybe instead of serializing, regexing and deserializing MCMCMC could work entirely with the BEASTObjects themselves. Only CalculationNodes and StateNodes need to be copied after all...