Changes for diversified sampling and OU prior

BEAST2-Dev / bdsky

Birth Death Serial Skyline Model for BEAST2

GNU General Public License v3.0

2 stars 11 forks source link

Changes for diversified sampling and OU prior #30

Closed zhangchicool closed 1 year ago

zhangchicool commented 1 year ago

I would like to merge my latest changes from my fork. for supporting Beast 2.7. For the OU prior, it was originally designed for inputing relative times in ascending order. I added support for absolute times in descending order. For diversified sampling, I added some tolerance for recognizing extant tips.

zhangchicool commented 1 year ago

Three files are changed, as shown in the tab "Files changed": src/bdsky/evolution/speciation/BirthDeathSkylineDiversifiedSampling.java src/bdsky/evolution/speciation/BirthDeathSkylineModel.java src/bdsky/OUPrior.java