I am trying to run the discrete mugration model with the package following the tutorial. I did the model construction in BEAUTi word-by-word but got strange results. Actually, the results, trees & logs turned out normal, according to the tutorial. However, I caught the following in stderr:
Warning: removing transform class beast.base.inference.operator.kernel.Transform$LogConstrainedSumTransform because it should have at least 2 dimensions but it has 0
Turning on scaling to prevent numeric instability 1.0201
…
0 NaN
1 NaN
2 NaN
3 NaN
4 NaN
java.lang.Error: randomChoiceUnnormalized falls through -- negative components in input distribution?
Please report error to Marc
I see such the first time and do not understand the reason. Moreover, I have compared my XML with the example from the package GitHub repository and did not detect the difference, of course, besides new BEAST 2.7 default operators. I tried to run the example unsuccessfully; it falls with:
Error 1017 parsing the xml input file
Class could not be found. Did you mean beast.base.inference.MCMC?
Perhaps a package required for this class is not installed?
Error detected about here:
<beast>
<run id='mcmc' spec='MCMC'>
May this error influence the results of real analyses? How to correct my XMLs to eradicate it?
I am trying to run the discrete mugration model with the package following the tutorial. I did the model construction in BEAUTi word-by-word but got strange results. Actually, the results, trees & logs turned out normal, according to the tutorial. However, I caught the following in
stderr:You may find all files here
I see such the first time and do not understand the reason. Moreover, I have compared my XML with the example from the package GitHub repository and did not detect the difference, of course, besides new BEAST 2.7 default operators. I tried to run the example unsuccessfully; it falls with:
May this error influence the results of real analyses? How to correct my XMLs to eradicate it?