BFL-lab Mfannot issues - Githubissues

BFL-lab / Mfannot

MFannot is a program for the annotation of mitochondrial and plastid genomes

GNU General Public License v3.0

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issues

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Bump Ubuntu version

#66 Adamtaranto opened 7 months ago
0
No download link for the results on the web server

#65 udavdasha opened 8 months ago
0
mf2sqn does not work in Docker container

#64 Adamtaranto opened 8 months ago
1
Using temp option breaks MFannot

#63 Adamtaranto opened 8 months ago
0
[FIX] tag extraction

#62 natacha-beck closed 11 months ago
0
[FIX] DL of tbl2asn (should be changed in favor of table2asn later)

#61 natacha-beck closed 11 months ago
0
[FIX] DL of tbl2asn (should be changed in favor of table2asn later)

#60 natacha-beck closed 11 months ago
0
[FIX] Mini exons and orf Overlap

#59 natacha-beck closed 11 months ago
1
Multiple fixes and addition (see description).

#58 natacha-beck closed 1 year ago
0
Fix random endo

#57 natacha-beck closed 1 year ago
0
Fix annotation of missing gene with *.hmm

#56 natacha-beck closed 1 year ago
0
[FIX] intronic ORF (add ATC as possible start)

#55 natacha-beck closed 1 year ago
0
[FIX] trans-spliced annotation for circular genome

#54 natacha-beck closed 1 year ago
0
Orf debug

#53 natacha-beck closed 1 year ago
0
Docker version: Error in execution of HMMsearch in RunHMMSearchForLowConservedGenes subroutine

#52 ckeeling opened 1 year ago
0
Cannot read result for 'IntronI

#51 gunjanpandey opened 1 year ago
2
.gbk

#50 siolybecerra opened 1 year ago
1
nucleotide fasta to Masterfile

#49 ivaneskos opened 1 year ago
2
How to cite Mfannot?

#48 gregpoore opened 2 years ago
1
Sequin file missing a gene predicted in the .new file

#47 RyanGawryluk closed 3 years ago
1
Dev

#46 natacha-beck closed 3 years ago
0
Dev

#45 natacha-beck closed 3 years ago
0
Merge Dev and Master.

#44 natacha-beck closed 3 years ago
0
Perl error when installing program in linux-based server

#43 ruthbpaula opened 3 years ago
5
[FIX] PIRMODELS env_var

#42 natacha-beck closed 3 years ago
0
ARRAY reference and Bio::SimpleAlign::column_from_residue_number problems

#41 gettl008 opened 4 years ago
1
Any plans for a Singularity or conda package? [Not a real issue]

#40 PerisD closed 3 years ago
4
Intron

#39 natacha-beck closed 4 years ago
0
Update mfannot

#38 natacha-beck closed 4 years ago
0
"Use of unitialized value" errors during processing of 'hnh'

#37 JFWolters opened 4 years ago
0
Fix false last intron

#36 natacha-beck closed 4 years ago
0
Fix for mini-exons

#35 natacha-beck closed 4 years ago
0
Fixed trailing exons by using exonerate if needed

#34 natacha-beck closed 4 years ago
0
Fix Dockerfile for dev branch

#33 natacha-beck closed 4 years ago
0
Fix dpo annotation

#32 natacha-beck closed 4 years ago
0
Added git version of Mfannot and PirModels

#31 natacha-beck closed 4 years ago
0
Add tbl output

#30 natacha-beck closed 4 years ago
0
Fixed order to define trim sequence

#29 natacha-beck closed 4 years ago
0
Fix Intron position to fix --trim issue

#28 natacha-beck closed 4 years ago
0
Adjust DefEachStartInHMM due to --trim option used by HMMER

#27 natacha-beck closed 4 years ago
0
Fix undefined when read EGC file

#26 natacha-beck closed 4 years ago
0
Fixed start for additional ORF

#25 natacha-beck closed 4 years ago
0
Fix concatenation issue in EGC file.

#24 natacha-beck closed 4 years ago
0
Change name of directory when running external program

#23 natacha-beck closed 4 years ago
0
Fix EGC concat issue

#22 natacha-beck closed 4 years ago
0
Fix stop in ORF and extract start codons from EGC file

#21 natacha-beck closed 4 years ago
0
How to generate `.tbl` when running the docker image?

#20 nathaliagg opened 5 years ago
9
rnl prediction has problem with genetic code 4

#19 sciencesj closed 4 years ago
7
Fix Intron position to fix --trim issue

#18 natacha-beck closed 5 years ago
0
Failure during Intron/Exon Annotation

#17 JFWolters closed 5 years ago
2