How to use paired end reads ?

BGI-Qingdao / TGS-GapCloser

A gap-closing software tool that uses long reads to enhance genome assembly.

GNU General Public License v3.0

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How to use paired end reads ? #13

Closed biozhangzhou closed 4 years ago

biozhangzhou commented 4 years ago

hello,Should i merge the paired reads and put it in the --ngs fields ?

adonis316 commented 4 years ago

Yes. Please combine the PE reads into one file for --ngs if you would use Pilon to do the error correction. Otherwise, you do not need PE short reads.

Thanks, Mengyang