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BGI-Qingdao / TGS-GapCloser

A gap-closing software tool that uses long reads to enhance genome assembly.
GNU General Public License v3.0
179 stars 13 forks source link

preassembled contigs #21

Closed lurebgi closed 3 years ago

lurebgi commented 3 years ago

Is it possible to use the preassembled contigs to fill the gaps? I don't see the option, but it appears in the Readme.

Thanks, Luohao

adonis316 commented 3 years ago

Sure. You can use the preassembled contigs as the corrected long reads to fill the gaps using "--ne" mode.

Thanks, Mengyang