Closed lurebgi closed 5 years ago
g++ -std=c++11 -I../ -g -c ../appcommon/ONT2Gap.cpp -o ../appcommon/ONT2Gap.o g++ -std=c++11 -I../ -g -c ../common/args/argsparser.cpp -o ../common/args/argsparser.o g++ TGSGapFiller.o ../common/files/file_reader.o ../biocommon/sam_bam/sam_parser.o ../biocommon/pair/pair_sam_parser.o ../biocommon/fasta/fasta.o ../biocommon/fastq/fastq.o ../biocommon/seq/seq.o ../biocommon/paf/PAF.o ../biocommon/align_common/align_result.o ../common/files/file_writer.o ../common/files/gzstream.o ../common/log/log.o ../common/log/logfilter.o ../common/time/timetools.o ../common/string/stringtools.o ../appcommon/contigPairInfo.o ../appcommon/ScaffInfo.o ../appcommon/ONT2Gap.o ../common/args/argsparser.o -L../minimap2 -lz -lminimap2 -lpthread -std=c++11 -I../ -g -o TGSGapFiller /usr/bin/ld: cannot find -lminimap2 collect2: error: ld returned 1 exit status make: *** [TGSGapFiller] Error 1
Note: problem is now solved after I compiled minimap2
g++ -std=c++11 -I../ -g -c ../appcommon/ONT2Gap.cpp -o ../appcommon/ONT2Gap.o g++ -std=c++11 -I../ -g -c ../common/args/argsparser.cpp -o ../common/args/argsparser.o g++ TGSGapFiller.o ../common/files/file_reader.o ../biocommon/sam_bam/sam_parser.o ../biocommon/pair/pair_sam_parser.o ../biocommon/fasta/fasta.o ../biocommon/fastq/fastq.o ../biocommon/seq/seq.o ../biocommon/paf/PAF.o ../biocommon/align_common/align_result.o ../common/files/file_writer.o ../common/files/gzstream.o ../common/log/log.o ../common/log/logfilter.o ../common/time/timetools.o ../common/string/stringtools.o ../appcommon/contigPairInfo.o ../appcommon/ScaffInfo.o ../appcommon/ONT2Gap.o ../common/args/argsparser.o -L../minimap2 -lz -lminimap2 -lpthread -std=c++11 -I../ -g -o TGSGapFiller /usr/bin/ld: cannot find -lminimap2 collect2: error: ld returned 1 exit status make: *** [TGSGapFiller] Error 1
Note: problem is now solved after I compiled minimap2