BGI-Qingdao / TGS-GapCloser

A gap-closing software tool that uses long reads to enhance genome assembly.
GNU General Public License v3.0
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paf file from minimap2 #32

Closed wyim-pgl closed 3 years ago

wyim-pgl commented 3 years ago

Hi, I wonder that we can use paf.gz file during process. it generated huge PAF file and it might helpful if we can use compressed paf.gz Thanks. Won

cchd0001 commented 3 years ago

Hi,

Both TGSCandidate and TGSGapCloser can use paf.gz. ( make sure the file name ended by ".gz" )

You can compress the huge paf and then change the pipeline to use the new file.

Best wishes Lidong Guo