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BGI-Qingdao / TGS-GapCloser

A gap-closing software tool that uses long reads to enhance genome assembly.
GNU General Public License v3.0
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Passing parameters to RACON? #52

Closed cement-head closed 2 years ago

cement-head commented 2 years ago

Hello,

I've compiled RACON for CUDA usage, is there a means to pass parameters (options) to RACON in TGS-GapCloser?

If so,how could I accomplish this?

cchd0001 commented 2 years ago

Hi,

Thank you for your interest in this project.

There is no special parameter for RACON in TGS-GapCloser. You can directly put your options for CUDA in TGS-GapCloser.sh line479.

Best wishes Lidong Guo