/home/hjn/anaconda3/envs/genome/bin/tgsgapcloser: line 443: 115644 Killed

BGI-Qingdao / TGS-GapCloser

A gap-closing software tool that uses long reads to enhance genome assembly.

GNU General Public License v3.0

170 stars 12 forks source link

/home/hjn/anaconda3/envs/genome/bin/tgsgapcloser: line 443: 115644 Killed #84

Open Hanjiangna opened 3 months ago

Hanjiangna commented 3 months ago

my code ohup tgsgapcloser --scaff R0301HifiHicOnt.fa --reads R0301.ONT.fa --racon ~/anaconda3/envs/genome/bin/racon --r_round 2 --output racon1 > pipe.log 2> pipe.err erro.log: /home/hjn/anaconda3/envs/genome/bin/tgsgapcloser: line 443: 115644 Killed $MiniMap2 $MINIMAP2_PARAM -t $THREAD $TGS_READS $TMP_INPUT_SCAFTIG > $OUT_PREFIX.sub.paf 2> $OUT_PREFIX.minimap2.01.log

liaoyuwen-github commented 1 month ago

Hello, has your problem been solved? If you solve it, can you share the solution with me?