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BGI-flexlab / SOAPnuke

A Tool for integrated Quality Control and Preprocessing on FASTQ or BAM/CRAM files
GNU General Public License v3.0
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demo config file #66

Open huangl07 opened 6 months ago

huangl07 commented 6 months ago

can you please show a demo config file for me, cause I wonder to know how to use tile or other parameters

wchenqi commented 3 months ago

can you please show a demo config file for me, cause I wonder to know how to use tile or other parameters

Me either. I got the same question.

berry08 commented 2 months ago

e.g. if you have 2 PE fastqs as input and wan't just keep 1M clean reads as output, add parameter --configFile myconfig, "myconfig" is a file name whose content like this:

totalReadsNum=1000000head inputAsList

inputAsList is a bool parameter which means -1/-2 parameters would be processed as a file which contains many fastq file path