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BGI-shenzhen / LDBlockShow

LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files
MIT License
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Error: Line 28 of .vcf file has a GT half-call. #26

Closed Sour01 closed 10 months ago

Sour01 commented 2 years ago

Hi! I use Plink to convert the my vcf format，but I encountered the following problems:

Error: Line 28 of .vcf file has a GT half-call. Use --vcf-half-call to specify how these should be processed.

But I didn't find --vcf-half-call.

Error: Missing --vcf-half-call parameter. For more information, try "plink --help " or "plink --help | more".

My command is : plink --vcf PT8.vcf --recode HV --out pap.region.hv --allow-extra-chr

Thanks!

hewm2008 commented 2 years ago

you can see this at this issues 17