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BGI-shenzhen / LDBlockShow

LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files
MIT License
136 stars 40 forks source link

Error #33

Closed Jcakon closed 1 year ago

Jcakon commented 1 year ago

When I use the example code " ../../bin/LDBlockShow -InVCF Test.vcf.gz -OutPut out1 -Region chr11:24100000:24200000 -OutPng -SeleVar 1 " There is a error means"Can't find the [ convert ] bin in your $PATH, I try to convert svg by /home/weizian/LDBlockShow-1.40/bin/svg_kit/svg2xxx.pl " What should I do to solve this problem. Thank you!

hewm2008 commented 1 year ago

For Big SVG file ---- > png

convert command is recommended to be pre-installed, although it is not required. If your system does not have a convert command, svg2xxx.pl will be called. you can use the follow command to pre-install the convert command; sudo apt-get install ImageMagick or sudo yum install ImageMagick