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BGI-shenzhen / LDBlockShow

LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files
MIT License
134 stars 40 forks source link

Color options #39

Closed elissaralam closed 2 weeks ago

elissaralam commented 7 months ago

Hello,

Thanks for developing LDblock show! I see the default colors for SNPs in the regional Manhattan plots are blue for insignificant SNPs and red for signifcant ones. Is it possible to change those colors? I don't see an option to do so in the manual but i've seen LDBlockShow-generated figures in manuscripts with different colors than the default.

Thanks a lot for any help with this, Elissa

hewm2008 commented 6 months ago

Hi, Elissa I don’t quite understand what you mean. I feel that adding a parameter "-TopSite" will change the relevant color, which may be what you want. You can try this parameter to see