Open tydcg opened 7 months ago
Maf 不可以为0 。为0就不是snp 了。可以保留 中低频的,你若是最新版本 看看打印在拼幕的信息 会洗哪个条件过滤多少位点.若是bi-allele 的indel 可以改一下ALT 即可以保留
Hi,
How to change the ALT for reserving the InDel sites?
@prometheusloong you can see at this : https://github.com/BGI-shenzhen/LDBlockShow/issues/7
Hi, I found some SNP/Indel sites were filtered, can I rescue them by certain parameters? And I want to calculate LD of rare variants, setting "-MAF 0", but this parameter doesn't seem to work? Please give me some guidance. Thank you!