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BGI-shenzhen / LDBlockShow

LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files
MIT License
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gwas.pvalue format #8

Closed huw143 closed 3 years ago

huw143 commented 3 years ago

Hi LDBlockShow group,

I raised another question that do you have an example of gwas.pvalue format? Thanks a lot,

Hu

hewm2008 commented 3 years ago

Dear @huw143
you can see it at the example/Example3/gwas.pvalue. also here : https://github.com/BGI-shenzhen/LDBlockShow/blob/master/example/Example3/gwas.pvalue There are three columns : [chr site pvalue]

By the way , If it is gwas, the software will log the data, so please make sure that your pvalue cannot be 0. If it is 0, you can take a minimum value for it .

huw143 commented 3 years ago

Super thanks for your help @hewm2008

hewm2008 commented 2 years ago

In the New ver of the V1.40 after 2021-12-06, the gwas file format There are three columns : [chr site pvalue] also can accept the new format(gwas.pvalue.cvs) here There are three columns : [chr,site,pvalue]