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BGI-shenzhen / PopLDdecay

PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files
MIT License
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LD error #19

Closed cfz1998 closed 1 year ago

cfz1998 commented 1 year ago

Hi! @hewm2008 The sub-population has 51 samples and the LD result seems incorrect. The reads used for mapping were from the assembled genome(Using wgsim).

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Thank you for your reply!

hewm2008 commented 1 year ago

Yes, it is recommended not to use simulated data.