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BGSU-RNA / WebR3DAlign

Web application for locally optimized, nucleotide to nucleotide pairwise alignments of RNA 3D structures
http://rna.bgsu.edu/r3dalign/
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Crash in zDistance 50dfc886c7dd3 #12

Closed rooks2181 closed 11 years ago

rooks2181 commented 11 years ago

Now the error is different:

query Loading PDB Info... loading Final Alignment Wrote 50dfc886c7dd3.pdb

ans =

MATLAB:innerdim

ans =

Inner matrix dimensions must agree.

ans = 

file: '/Servers/rna.bgsu.edu/r3dalign_dev/R3DAlign/FR3D/FR3DSource/zDistance.m'
name: 'zDistance'
line: 19

ans = 

file: '/Servers/rna.bgsu.edu/r3dalign_dev/R3DAlign/FR3D/FR3DSource/zMutualDistance.m'
name: 'zMutualDistance'
line: 9

ans = 

file: '/Servers/rna.bgsu.edu/r3dalign_dev/R3DAlign/R3DAlign/rFindAlignmentDiscrepancies.m'
name: 'rFindAlignmentDiscrepancies'
line: 12

ans = 

file: '/Servers/rna.bgsu.edu/r3dalign_dev/R3DAlign/R3DAlign/rAlignmentSpreadsheet.m'
name: 'rAlignmentSpreadsheet'
line: 196

ans = 

file: '/Servers/rna.bgsu.edu/r3dalign_dev/R3DAlign/R3DAlign.m'
name: 'WriteOutput'
line: 679

ans = 

file: '/Servers/rna.bgsu.edu/r3dalign_dev/R3DAlign/R3DAlign.m'
name: 'R3DAlign'
line: 638
rooks2181 commented 11 years ago

Every time I run this query, it has a memory error (not a surprise since d=0.8 is used). I did have an error in zDistance one other time that didn't happen again after a restart so I don't think this is cause for major concern, more likely an isolated event. I suggest closing this issue. If it happens again, I'll deal with it then.