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BIC-MNI / libminc

libminc is the core library and API of the MINC toolkit
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minc2-record-test segfaults with HDF5 1.12.0 #114

Closed bcdarwin closed 2 years ago

bcdarwin commented 3 years ago

Currently causing a libminc build failure in the Nixpkgs/NixOS CI (git bisect blames https://github.com/NixOS/nixpkgs/commit/669636256265f6e47cc75126b7b003c4554d0acb):

Start 47: minc2-record-test
47/53 Test #47: minc2-record-test ................***Exception: SegFault  0.06 sec

Not yet sure if this indicates an underlying issue affecting the current MINC toolkit using 1.10.x for which the test passes or is due to an API channge.

seanm commented 2 years ago

This test is passing for me with libminc (latest git) with hdf (latest git).

gdevenyi commented 2 years ago

@bcdarwin I guess this means there was a bug in hdf5 that has been since resolved? Would be interesting to see if other sub-releases pass again

vfonov commented 2 years ago

just FYI, there is no software that I am aware of that uses "record" data type that this test is testing.

bcdarwin commented 2 years ago

It's passing for me as well with HDF5 1.12.1, although with segfaults or other memory corruption I never know what package to blame.