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BIC-MNI / minc-toolkit-v2

Version 2 of the minc-toolkit, uses tools based on ITK version 4.x
GNU General Public License v3.0
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Configure failed on AWS EC2 #140

Closed XinQi7788 closed 3 years ago

XinQi7788 commented 3 years ago

We are trying to install minc-toolkit-v2 on our AWS EC2.

The EC2 system configuration is below: Linux ip-10-111-250-7 5.4.0-1039-aws #41~18.04.1-Ubuntu SMP Fri Feb 26 11:20:14 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux

We followed the steps to configure build system to build all the tools and install them into /opt/minc/1.9.18 on the EC2 by using ccmake .. We set all the values as same as the configuration details on the github.

BUT get configuration errors as below: Please help me on how to fix this issue. Looking forward to your reply. Thanks a lot.

CMake Deprecation Warning at mni_autoreg/CMakeLists.txt:40 (CMAKE_POLICY): The OLD behavior for policy CMP0026 will be removed from a future version of CMake.

The cmake-policies(7) manual explains that the OLD behaviors of all policies are deprecated and that a policy should be set to OLD only under specific short-term circumstances. Projects should be ported to the NEW behavior and not rely on setting a policy to OLD.

CMake Error at cmake-modules/DownloadPackage.cmake:4 (file): file DOWNLOAD HASH mismatch

 for file: [/home/Xin/minc-toolkit-v2/build/cache/gsl-2.4.tar.gz]
   expected hash: [dba736f15404807834dc1c7b93e83b92]
     actual hash: [d41d8cd98f00b204e9800998ecf8427e]
          status: [22;"HTTP response code said error"]

Call Stack (most recent call first): cmake-modules/BuildGSL.cmake:13 (GET_PACKAGE) CMakeLists.txt:437 (build_gsl)

CMake Error at /usr/share/cmake-3.10/Modules/FindPackageHandleStandardArgs.cmake:137 (message): Could NOT find EXPAT (missing: EXPAT_LIBRARY EXPAT_INCLUDE_DIR) Call Stack (most recent call first): /usr/share/cmake-3.10/Modules/FindPackageHandleStandardArgs.cmake:378 (_FPHSA_FAILURE_MESSAGE) /usr/share/cmake-3.10/Modules/FindEXPAT.cmake:61 (FIND_PACKAGE_HANDLE_STANDARD_ARGS) CMakeLists.txt:471 (FIND_PACKAGE)

gdevenyi commented 3 years ago

There is no release with this fix, you can cherry pick, or patch it it yourself: https://github.com/BIC-MNI/minc-toolkit-v2/commit/eebdf1c8ac9dca58eb2b7af49a39e8b989b63063

gdevenyi commented 3 years ago

However, why are you building for Ubuntu, there are binaries available at https://bic-mni.github.io/

XinQi7788 commented 3 years ago

Hi Gabriel:

Thank you so much for the information.

Best Regards Xin

From: Gabriel A. Devenyi @.> Sent: Friday, August 13, 2021 2:35 PM To: BIC-MNI/minc-toolkit-v2 @.> Cc: Xin Qi @.>; Author @.> Subject: [EXTERNAL] Re: [BIC-MNI/minc-toolkit-v2] Configure failed on AWS EC2 (#140)

However, why are you building for Ubuntu, there are binaries available at https://bic-mni.github.io/https://clicktime.symantec.com/3SJwrvhwrXCcZe5gsTNZqyN7Vc?u=https%3A%2F%2Fbic-mni.github.io%2F

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