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BIC-MNI / minc-toolkit-v2

Version 2 of the minc-toolkit, uses tools based on ITK version 4.x
GNU General Public License v3.0
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make[1]: *** [CMakeFiles/patch_morphology.dir/all] Error 2 #85

Closed ekuama closed 4 years ago

ekuama commented 5 years ago

After following the procedure git clone --recursive https://github.com/BIC-MNI/minc-toolkit-v2.git minc-toolkit-v2 cd minc-toolkit-v2 mkdir build && cd build ccmake .. # cmake .. \ -DCMAKE_BUILD_TYPE:STRING=Release \ -DCMAKE_INSTALL_PREFIX:PATH=/opt/minc/1.9.15 \ -DMT_BUILD_ABC:BOOL=ON \ -DMT_BUILD_ANTS:BOOL=ON \ -DMT_BUILD_C3D:BOOL=ON \ -DMT_BUILD_ELASTIX:BOOL=ON \ -DMT_BUILD_IM:BOOL=OFF \ -DMT_BUILD_ITK_TOOLS:BOOL=ON \ -DMT_BUILD_LITE:BOOL=OFF \ -DMT_BUILD_SHARED_LIBS:BOOL=ON \ -DMT_BUILD_VISUAL_TOOLS:BOOL=ON \ -DMT_USE_OPENMP:BOOL=ON \ -DUSE_SYSTEM_FFTW3D:BOOL=OFF \ -DUSE_SYSTEM_FFTW3F:BOOL=OFF \ -DUSE_SYSTEM_GLUT:BOOL=OFF \ -DUSE_SYSTEM_GSL:BOOL=OFF \ -DUSE_SYSTEM_HDF5:BOOL=OFF \ -DUSE_SYSTEM_ITK:BOOL=OFF \ -DUSE_SYSTEM_NETCDF:BOOL=OFF \ -DUSE_SYSTEM_NIFTI:BOOL=OFF \ -DUSE_SYSTEM_PCRE:BOOL=OFF \ -DUSE_SYSTEM_ZLIB:BOOL=OFF

make && make install

This is the error that I get src/CMakeFiles/itk_patch_grading.dir/build.make:242: recipe for target 'src/itk_patch_grading' failed make[5]: [src/itk_patch_grading] Error 1 CMakeFiles/Makefile2:247: recipe for target 'src/CMakeFiles/itk_patch_grading.dir/all' failed make[4]: [src/CMakeFiles/itk_patch_grading.dir/all] Error 2 Makefile:140: recipe for target 'all' failed make[3]: [all] Error 2 CMakeFiles/patch_morphology.dir/build.make:110: recipe for target 'patch_morphology-prefix/src/patch_morphology-stamp/patch_morphology-build' failed make[2]: [patch_morphology-prefix/src/patch_morphology-stamp/patch_morphology-build] Error 2 CMakeFiles/Makefile2:2670: recipe for target 'CMakeFiles/patch_morphology.dir/all' failed make[1]: [CMakeFiles/patch_morphology.dir/all] Error 2 Makefile:162: recipe for target 'all' failed make: [all] Error 2

I tried to restart the whole process by git clone --recursive https://github.com/BIC-MNI/minc-toolkit-v2.git minc-toolkit-v2 and git checkout develop but the error I get is fatal: not a git repository (or any of the parent directories): .git

Please what I am doing wrong?

Thank you for your help in advance

gdevenyi commented 5 years ago

The current release is 1.9.17: git clone --branch release-1.9.17 --recursive https://github.com/BIC-MNI/minc-toolkit-v2.git

gdevenyi commented 4 years ago

Hi @RDadarwal, first, please do not post new errors to unrelated issues.

Second, the output snip you have posted is clearly marked as a warning and does not contain the word error. This message is informational and does not impact the current state of the build.