gdevenyi
commented
7 years ago PrintHeader:
PrintHeader f0001.hdr
Spacing [0.9375, 0.9375, 1.5]
Origin [-123.817, -78.817, 93.6996]
Direction
-0 1 0
0 -0 1
-1 0 -0
Size : 256 256 120
Image Dimensions : [256, 256, 120]
Bounding Box : {[-123.817 -78.817 93.6996], [116.183 161.183 273.7]}
Voxel Spacing : [0.9375, 0.9375, 1.5]
Intensity Range : [-5, 92]
Mean Intensity : 11.578
Direction Cos Mtx. :
-0 1 0
0 -0 1
-1 0 -0
Voxel->RAS x-form :
Image Metadata:
bitpix = 16
cal_max = 0
cal_min = 0
datatype = 4
dim[0] = 3
dim[1] = 256
dim[2] = 256
dim[3] = 120
dim[4] = 1
dim[5] = 1
dim[6] = 1
dim[7] = 1
intent_code = 0
intent_p1 = 3.92546e-41
intent_p2 = 0
intent_p3 = 0
pixdim[0] = -1
pixdim[1] = 0.9375
pixdim[2] = 0.9375
pixdim[3] = 1.5
pixdim[4] = 0
pixdim[5] = 0
pixdim[6] = 0
pixdim[7] = 0
qform_code = 1
qform_code_name = NIFTI_XFORM_SCANNER_ANAT
qoffset_x = 123.817
qoffset_y = 78.817
qoffset_z = 93.6996
quatern_b = -0.5
quatern_c = 0.5
quatern_d = 0.5
scl_inter = 0
scl_slope = 0
sform_code = 1
sform_code_name = NIFTI_XFORM_SCANNER_ANAT
slice_duration = 0
slice_end = 0
slice_start = 0
srow_x = -0 -0.9375 -0 123.817
srow_y = 0 -0 -0.9375 78.817
srow_z = -1.5 0 0 93.6996
toffset = 0
vox_offset = 0
I have some .hdr/.img files from the fBRIN section of Schzconnect which 1) Don't render properly in Display 2) Don't convert properly with nii2mnc
In particular, they end up squeezed compared to the originals:
Example: Display:
FSL
Conversion results in a MINC file which looks like the view in Display.
Happy to provide multiple examples.