BIDMat/BIDMach can not load native CPU Libraries

[husnusensoy]

$  ~/Downloads/BIDMach_1.0.3-osx-x86_64  ./bidmach Loading /Users/husnusensoy/Downloads/BIDMach_1.0.3-osx-x86_64/lib/bidmachinit.scala... import BIDMat.{CMat, CSMat, DMat, Dict, FMat, FND, GMat, GDMat, GIMat, GLMat, GSMat, GSDMat, HMat, IDict, Image, IMat, LMat, Mat, SMat, SBMat, SDMat} import BIDMat.MatFunctions. import BIDMat.SciFunctions. import BIDMat.Solvers. import BIDMat.Plotting._ import BIDMach.Learner import BIDMach.models.{FM, GLM, KMeans, KMeansw, LDA, LDAgibbs, Model, NMF, SFA, RandomForest} import BIDMach.networks.DNN import BIDMach.datasources.{DataSource, MatDS, FilesDS, SFilesDS} import BIDMach.mixins.{CosineSim, Perplexity, Top, L1Regularizer, L2Regularizer} import BIDMach.updaters.{ADAGrad, Batch, BatchNorm, IncMult, IncNorm, Telescoping} import BIDMach.causal.IPTW Cant find native CPU libraries Cant find native HDF5 library Couldnt load CUDA runtime

Welcome to Scala version 2.11.2 (Java HotSpot(TM) 64-Bit Server VM, Java 1.7.0_79). Type in expressions to have them evaluated. Type :help for more information.

scala> Mat.checkMKL Cant find native HDF5 library

Also it seems that checkMKL only checks for HDF5 ?!?

[jcanny]

The 1.03 release has issues these kinds of issues when run on a machine that doesnt have CUDA installed (long story). This was fixed some time ago in the main branch. You can always get the latest version by cloning BIDMach from github: git clone http://github.com/BIDData/BIDMach.git and then in the main BIDMach directory do: ./getdevlibs.sh to pull the compiled libraries for your platform from the project web site.

[svanschalkwyk]

Getting it on latest build and ./getdevlibs.sh is deprecated. Scala> import BIDMat.{CMat,CSMat,DMat,Dict,IDict,FMat,GMat,GIMat,GSMat,GSDMat,HMat,IMat,Image,LMat,Mat,SMat,SBMat,SDMat} import BIDMat.{CMat, CSMat, DMat, Dict, IDict, FMat, GMat, GIMat, GSMat, GSDMat, HMat, IMat, Image, LMat, Mat, SMat, SBMat, SDMat} scala> Mat.checkMKL Cant find native HDF5 library