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BIH-CEI
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phenopacket_mapper
A Python library to map from any bespoke tabular data format to the GA4GH Phenopacket schema.
https://bih-cei.github.io/phenopacket_mapper/latest/
MIT License
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update recursive get
#188
frehburg
opened
3 weeks ago
1
wrote method to recurse through datamodel
#187
frehburg
closed
3 weeks ago
0
fix hierarchical datamodel fields in datamodel in phenopacket mapper
#186
frehburg
closed
3 weeks ago
0
strange
#185
frehburg
closed
3 weeks ago
0
bug mapper check in model
#184
frehburg
closed
3 weeks ago
0
179 read hierarchical data
#183
frehburg
closed
3 weeks ago
0
validate hierarchical data
#182
frehburg
opened
3 weeks ago
0
fix loading of orgroups
#181
frehburg
opened
3 weeks ago
2
set identifiers based on file names to data model instances when loading from a file
#180
frehburg
opened
3 weeks ago
0
read hierarchical data
#179
frehburg
closed
3 weeks ago
0
177 debug data reader
#178
frehburg
closed
3 weeks ago
0
debug data reader
#177
frehburg
closed
3 weeks ago
0
added remove at symbols and tested it
#176
frehburg
closed
3 weeks ago
0
remove @symbols when reading xmls
#175
frehburg
closed
3 weeks ago
0
156 add util method that loads data in whatever format and provides an iterator for instances
#174
frehburg
closed
3 weeks ago
0
hierarchical datamodel
#173
frehburg
closed
3 weeks ago
0
good viz for datamodel
#172
frehburg
opened
3 weeks ago
0
add DataSection class
#171
frehburg
closed
3 weeks ago
0
change datafield to work with datanode
#170
frehburg
closed
3 weeks ago
0
course of action
#169
frehburg
opened
1 month ago
0
parse protobuf files to load phenopacket schema as data model
#168
frehburg
opened
1 month ago
0
165 api design with abc
#167
ielis
closed
1 month ago
0
change taking path to taking buffer
#166
frehburg
opened
1 month ago
2
API Design with ABC
#165
frehburg
closed
1 month ago
0
t
#164
frehburg
closed
1 month ago
0
121 datafield constructor change value set
#163
frehburg
closed
1 month ago
0
120 rename phenopacketelement to phenopacketbuildingblock
#162
frehburg
closed
1 month ago
0
renamed compliance from soft and hard to lenient and strict
#161
frehburg
closed
1 month ago
0
Doc charts
#160
frehburg
closed
1 month ago
0
add method to parse a value specifically based on a type that is passed
#159
frehburg
opened
1 month ago
0
change parsing
#158
frehburg
opened
1 month ago
0
`input.py:load_data_using_data_model`: change to allow for hierarchical data
#157
frehburg
opened
1 month ago
0
add util method that loads data in whatever format and provides an iterator for instances
#156
frehburg
closed
3 weeks ago
0
allow for non tabular data
#155
frehburg
opened
1 month ago
0
rename compliance literals
#154
frehburg
closed
1 month ago
0
remove resources from PhenopacketMapper init
#153
frehburg
closed
1 month ago
0
PhenopacketMapper does not need param resources, can take from data model
#152
frehburg
closed
1 month ago
0
150 bug tuple list fields
#151
frehburg
closed
1 month ago
0
bug: tuple list fields
#150
frehburg
closed
1 month ago
0
changed fields in DataModel from list to tuple
#149
frehburg
closed
1 month ago
0
converting string object to path if string is passed
#148
frehburg
closed
1 month ago
0
load_data_using_data_model needs to convert str to path obj
#147
frehburg
closed
1 month ago
0
make data model fields immutable
#146
frehburg
closed
1 month ago
0
144 hpo
#145
frehburg
closed
1 month ago
0
hpo
#144
frehburg
closed
1 month ago
0
142 orpha api
#143
frehburg
closed
1 month ago
0
orpha api
#142
frehburg
closed
1 month ago
0
fix-preprocessing
#141
frehburg
closed
3 weeks ago
2
fix preprocessing
#140
frehburg
opened
1 month ago
0
Change "about" link from stable to latest
#139
cmungall
closed
1 month ago
1
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