Alessandro-Guidi
commented
1 year ago Hello, we are already working to solve your problem. We will get back to you with more details in the next few days.
Alessandro
Open xieduo7 opened 1 year ago
Alessandro-Guidi
commented
1 year ago Hello, we are already working to solve your problem. We will get back to you with more details in the next few days.
Alessandro
Alessandro-Guidi
commented
1 year ago Where are you running it? Your problem is the same as the one mentioned in our README under the "POSSIBLE PROBLEMS" section. Because the GLMakie library, which uses the GPU, may give this error when using a virtual machine with Ubuntu. I await your feedback.
Alessandro
Alessandro-Guidi
commented
1 year ago Hi @xieduo7 , I have changed the backend to plot file, now J-Space uses CairoMakie and your problem should be fixed. I hope you will try again J-Space to give me feedback.
Alessandro
xieduo7
commented
1 year ago Hi @Alessandro-Guidi ,
Thank you for your work. But I have come across another issue when running the example code. I will open another issue.
However, for the installation of J_Space, can I install it using Pkg.add? I have tried it but failed (by the way, I used this package under julia Version 1.7.3 and Linux version 3.10.0-1160.41.1.el7.x86_64 (mockbuild@kbuilder.bsys.centos.org) (gcc version 4.8.5 20150623 (Red Hat 4.8.5-44) (GCC) ) #1 SMP Tue Aug 31 14:52:47 UTC 2021 instead of a virtual machine):
julia
_
_ _ _(_)_ | Documentation: https://docs.julialang.org
(_) | (_) (_) |
_ _ _| |_ __ _ | Type "?" for help, "]?" for Pkg help.
| | | | | | |/ _` | |
| | |_| | | | (_| | | Version 1.7.3 (2022-05-06)
_/ |\__'_|_|_|\__'_| | Official https://julialang.org/ release
|__/ |
julia> using J_Space
ERROR: ArgumentError: Package J_Space not found in current path:
- Run `import Pkg; Pkg.add("J_Space")` to install the J_Space package.
Stacktrace:
[1] require(into::Module, mod::Symbol)
@ Base ./loading.jl:967
julia> import Pkg; Pkg.add("/data/xieduo/software/J-Space.jl")
ERROR: `/data/xieduo/software/J-Space.jl` is not a valid package name. Perhaps you meant `/data/xieduo/software/J-Space`
The argument appears to be a URL or path, perhaps you meant `Pkg.add(url="...")` or `Pkg.add(path="...")`.
Stacktrace:
[1] pkgerror(msg::String)
@ Pkg.Types ~/software/julia-1.7.3/share/julia/stdlib/v1.7/Pkg/src/Types.jl:68
[2] check_package_name
@ ~/software/julia-1.7.3/share/julia/stdlib/v1.7/Pkg/src/API.jl:128 [inlined]
[3] add(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; preserve::Pkg.Types.PreserveLevel, platform::Base.BinaryPlatforms.Platform, kwargs::Base.Pairs{Symbol, Base.TTY, Tuple{Symbol}, NamedTuple{(:io,), Tuple{Base.TTY}}})
@ Pkg.API ~/software/julia-1.7.3/share/julia/stdlib/v1.7/Pkg/src/API.jl:225
[4] add(pkgs::Vector{Pkg.Types.PackageSpec}; io::Base.TTY, kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Pkg.API ~/software/julia-1.7.3/share/julia/stdlib/v1.7/Pkg/src/API.jl:149
[5] add(pkgs::Vector{Pkg.Types.PackageSpec})
@ Pkg.API ~/software/julia-1.7.3/share/julia/stdlib/v1.7/Pkg/src/API.jl:144
[6] #add#27
@ ~/software/julia-1.7.3/share/julia/stdlib/v1.7/Pkg/src/API.jl:142 [inlined]
[7] add
@ ~/software/julia-1.7.3/share/julia/stdlib/v1.7/Pkg/src/API.jl:142 [inlined]
[8] #add#26
@ ~/software/julia-1.7.3/share/julia/stdlib/v1.7/Pkg/src/API.jl:141 [inlined]
[9] add(pkg::String)
@ Pkg.API ~/software/julia-1.7.3/share/julia/stdlib/v1.7/Pkg/src/API.jl:141
[10] top-level scope
@ REPL[2]:1
julia> import Pkg; Pkg.add(path="/data/xieduo/software/J-Space.jl")
Cloning git-repo `/data/xieduo/software/J-Space.jl`
Updating git-repo `/data/xieduo/software/J-Space.jl`
Updating registry at `~/.julia/registries/General.toml`
Resolving package versions...
ERROR: Unsatisfiable requirements detected for package GraphMakie [1ecd5474]:
GraphMakie [1ecd5474] log:
├─possible versions are: 0.1.0-0.4.1 or uninstalled
├─restricted to versions * by J_Space [fd1b0027], leaving only versions 0.1.0-0.4.1
│ └─J_Space [fd1b0027] log:
│ ├─possible versions are: 0.1.0 or uninstalled
│ └─J_Space [fd1b0027] is fixed to version 0.1.0
├─restricted by compatibility requirements with AbstractPlotting [537997a7] to versions: 0.2.0-0.4.1 or uninstalled, leaving only versions: 0.2.0-0.4.1
│ └─AbstractPlotting [537997a7] log:
│ ├─possible versions are: 0.9.0-0.18.3 or uninstalled
│ ├─restricted by compatibility requirements with PlotUtils [995b91a9] to versions: 0.9.0-0.10.6 or uninstalled
│ │ └─PlotUtils [995b91a9] log:
│ │ ├─possible versions are: 0.5.0-1.3.1 or uninstalled
│ │ ├─restricted by compatibility requirements with Plots [91a5bcdd] to versions: 0.5.0-1.3.1
│ │ │ └─Plots [91a5bcdd] log:
│ │ │ ├─possible versions are: 0.12.1-1.33.0 or uninstalled
│ │ │ ├─restricted to versions * by SubClonalSelection [f2909333], leaving only versions 0.12.1-1.33.0
│ │ │ │ └─SubClonalSelection [f2909333] log:
│ │ │ │ ├─possible versions are: 0.0.0 or uninstalled
│ │ │ │ └─SubClonalSelection [f2909333] is fixed to version 0.0.0
│ │ │ ├─restricted by compatibility requirements with StatsPlots [f3b207a7] to versions: 0.14.0-1.33.0
│ │ │ │ └─StatsPlots [f3b207a7] log:
│ │ │ │ ├─possible versions are: 0.10.0-0.15.3 or uninstalled
│ │ │ │ ├─restricted to versions * by CanEvolve [28e55d1b], leaving only versions 0.10.0-0.15.3
│ │ │ │ │ └─CanEvolve [28e55d1b] log:
│ │ │ │ │ ├─possible versions are: 0.1.0 or uninstalled
│ │ │ │ │ └─CanEvolve [28e55d1b] is fixed to version 0.1.0
│ │ │ │ └─restricted by compatibility requirements with Plots [91a5bcdd] to versions: 0.10.0-0.14.33 or uninstalled, leaving only versions: 0.10.0-0.14.33
│ │ │ │ └─Plots [91a5bcdd] log: see above
│ │ │ ├─restricted by compatibility requirements with RecipesBase [3cdcf5f2] to versions: 0.12.1-0.29.9 or uninstalled, leaving only versions: 0.14.0-0.29.9
│ │ │ │ └─RecipesBase [3cdcf5f2] log:
│ │ │ │ ├─possible versions are: 0.4.0-1.2.1 or uninstalled
│ │ │ │ ├─restricted by compatibility requirements with Plots [91a5bcdd] to versions: 0.4.0-1.2.1
│ │ │ │ │ └─Plots [91a5bcdd] log: see above
│ │ │ │ ├─restricted by compatibility requirements with StatsPlots [f3b207a7] to versions: 0.5.0-1.2.1
│ │ │ │ │ └─StatsPlots [f3b207a7] log: see above
│ │ │ │ └─restricted by compatibility requirements with CancerSeqSim [c7b3ebfe] to versions: 0.4.0-0.8.0, leaving only versions: 0.5.0-0.8.0
│ │ │ │ └─CancerSeqSim [c7b3ebfe] log:
│ │ │ │ ├─possible versions are: 0.2.0 or uninstalled
│ │ │ │ └─restricted to versions * by SubClonalSelection [f2909333], leaving only versions 0.2.0
│ │ │ │ └─SubClonalSelection [f2909333] log: see above
│ │ │ └─restricted by compatibility requirements with StaticArrays [90137ffa] to versions: 0.21.0-1.33.0 or uninstalled, leaving only versions: 0.21.0-0.29.9
│ │ │ └─StaticArrays [90137ffa] log:
│ │ │ ├─possible versions are: 0.8.0-1.5.7 or uninstalled
│ │ │ ├─restricted by compatibility requirements with PhyloNetworks [33ad39ac] to versions: 0.8.3-1.5.7
│ │ │ │ └─PhyloNetworks [33ad39ac] log:
│ │ │ │ ├─possible versions are: 0.9.0-0.15.2 or uninstalled
│ │ │ │ └─restricted to versions * by J_Space [fd1b0027], leaving only versions 0.9.0-0.15.2
│ │ │ │ └─J_Space [fd1b0027] log: see above
│ │ │ └─restricted by compatibility requirements with GeometryBasics [5c1252a2] to versions: 0.12.0-1.5.7
│ │ │ └─GeometryBasics [5c1252a2] log:
│ │ │ ├─possible versions are: 0.1.0-0.4.4 or uninstalled
│ │ │ └─restricted by compatibility requirements with NetworkLayout [46757867] to versions: 0.3.0-0.4.4
│ │ │ └─NetworkLayout [46757867] log:
│ │ │ ├─possible versions are: 0.2.0-0.4.4 or uninstalled
│ │ │ ├─restricted to versions * by J_Space [fd1b0027], leaving only versions 0.2.0-0.4.4
│ │ │ │ └─J_Space [fd1b0027] log: see above
│ │ │ └─restricted by compatibility requirements with GraphMakie [1ecd5474] to versions: 0.3.0-0.4.4
│ │ │ └─GraphMakie [1ecd5474] log: see above
│ │ └─restricted by compatibility requirements with Plots [91a5bcdd] to versions: 0.5.0-0.6.5
│ │ └─Plots [91a5bcdd] log: see above
│ └─restricted by compatibility requirements with GeometryBasics [5c1252a2] to versions: [0.9.0-0.9.27, 0.12.9-0.18.3] or uninstalled, leaving only versions: 0.9.0-0.9.27 or uninstalled
│ └─GeometryBasics [5c1252a2] log: see above
└─restricted by compatibility requirements with Makie [ee78f7c6] to versions: 0.1.0 or uninstalled — no versions left
└─Makie [ee78f7c6] log:
├─possible versions are: 0.9.0-0.17.13 or uninstalled
├─restricted by compatibility requirements with PlotUtils [995b91a9] to versions: 0.9.0-0.12.0 or uninstalled
│ └─PlotUtils [995b91a9] log: see above
└─restricted by compatibility requirements with AbstractPlotting [537997a7] to versions: [0.9.0-0.9.6, 0.13.0-0.17.13] or uninstalled, leaving only versions: 0.9.0-0.9.6 or uninstalled
└─AbstractPlotting [537997a7] log: see above
Stacktrace:
[1] propagate_constraints!(graph::Pkg.Resolve.Graph, sources::Set{Int64}; log_events::Bool)
@ Pkg.Resolve ~/software/julia-1.7.3/share/julia/stdlib/v1.7/Pkg/src/Resolve/graphtype.jl:1063
[2] propagate_constraints! (repeats 2 times)
@ ~/software/julia-1.7.3/share/julia/stdlib/v1.7/Pkg/src/Resolve/graphtype.jl:1000 [inlined]
[3] simplify_graph!(graph::Pkg.Resolve.Graph, sources::Set{Int64}; clean_graph::Bool)
@ Pkg.Resolve ~/software/julia-1.7.3/share/julia/stdlib/v1.7/Pkg/src/Resolve/graphtype.jl:1519
[4] simplify_graph! (repeats 2 times)
@ ~/software/julia-1.7.3/share/julia/stdlib/v1.7/Pkg/src/Resolve/graphtype.jl:1519 [inlined]
[5] resolve_versions!(env::Pkg.Types.EnvCache, registries::Vector{Pkg.Registry.RegistryInstance}, pkgs::Vector{Pkg.Types.PackageSpec}, julia_version::VersionNumber)
@ Pkg.Operations ~/software/julia-1.7.3/share/julia/stdlib/v1.7/Pkg/src/Operations.jl:335
[6] targeted_resolve(env::Pkg.Types.EnvCache, registries::Vector{Pkg.Registry.RegistryInstance}, pkgs::Vector{Pkg.Types.PackageSpec}, preserve::Pkg.Types.PreserveLevel, julia_version::VersionNumber)
@ Pkg.Operations ~/software/julia-1.7.3/share/julia/stdlib/v1.7/Pkg/src/Operations.jl:1154
[7] tiered_resolve(env::Pkg.Types.EnvCache, registries::Vector{Pkg.Registry.RegistryInstance}, pkgs::Vector{Pkg.Types.PackageSpec}, julia_version::VersionNumber)
@ Pkg.Operations ~/software/julia-1.7.3/share/julia/stdlib/v1.7/Pkg/src/Operations.jl:1139
[8] _resolve(io::Base.TTY, env::Pkg.Types.EnvCache, registries::Vector{Pkg.Registry.RegistryInstance}, pkgs::Vector{Pkg.Types.PackageSpec}, preserve::Pkg.Types.PreserveLevel, julia_version::VersionNumber)
@ Pkg.Operations ~/software/julia-1.7.3/share/julia/stdlib/v1.7/Pkg/src/Operations.jl:1160
[9] add(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}, new_git::Set{Base.UUID}; preserve::Pkg.Types.PreserveLevel, platform::Base.BinaryPlatforms.Platform)
@ Pkg.Operations ~/software/julia-1.7.3/share/julia/stdlib/v1.7/Pkg/src/Operations.jl:1176
[10] add(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; preserve::Pkg.Types.PreserveLevel, platform::Base.BinaryPlatforms.Platform, kwargs::Base.Pairs{Symbol, Base.TTY, Tuple{Symbol}, NamedTuple{(:io,), Tuple{Base.TTY}}})
@ Pkg.API ~/software/julia-1.7.3/share/julia/stdlib/v1.7/Pkg/src/API.jl:268
[11] add(pkgs::Vector{Pkg.Types.PackageSpec}; io::Base.TTY, kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Pkg.API ~/software/julia-1.7.3/share/julia/stdlib/v1.7/Pkg/src/API.jl:149
[12] add(pkgs::Vector{Pkg.Types.PackageSpec})
@ Pkg.API ~/software/julia-1.7.3/share/julia/stdlib/v1.7/Pkg/src/API.jl:144
[13] #add#26
@ ~/software/julia-1.7.3/share/julia/stdlib/v1.7/Pkg/src/API.jl:141 [inlined]
[14] add
@ ~/software/julia-1.7.3/share/julia/stdlib/v1.7/Pkg/src/API.jl:141 [inlined]
[15] add(; name::Nothing, uuid::Nothing, version::Nothing, url::Nothing, rev::Nothing, path::String, mode::Pkg.Types.PackageMode, subdir::Nothing, kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Pkg.API ~/software/julia-1.7.3/share/julia/stdlib/v1.7/Pkg/src/API.jl:166
[16] top-level scope
@ REPL[3]:1Best, Duo
Alessandro-Guidi
commented
1 year ago Hi @xieduo7 ,
You can now install J-Space using Pkg.add.
You can use import Pkg; Pkg.add(path="path/your/local/project") as you did or you can use URL from github: import Pkg; Pkg.add(url="https://github.com/BIMIB-DISCo/J-Space.jl.git")
For your problem, I have several suggestions, but first can I see the list of currently installed packages? You need to run Pkg.status()
xieduo7
commented
1 year ago Hi @Alessandro-Guidi ，
The packege status:
julia> Pkg.status()
Status `~/.julia/environments/v1.7/Project.toml`
[336ed68f] CSV v0.10.4
[28e55d1b] CanEvolve v0.1.0 `https://github.com/tomouellette/CanEvolve.jl#main`
[a93c6f00] DataFrames v0.21.8
[31c24e10] Distributions v0.23.12
[38e38edf] GLM v1.8.0
[7073ff75] IJulia v1.23.3
[91a5bcdd] Plots v0.29.9
[2913bbd2] StatsBase v0.33.16
[f3b207a7] StatsPlots v0.14.33
[f2909333] SubClonalSelection v0.0.0 `https://github.com/marcjwilliams1/SubClonalSelection.jl#master`
[9d95f2ec] TypedTables v1.4.0For the installation, I still can't succeed (see code posted below). What is the Julia version you used to develop this package? Unlike python, julia is very unstable among different versions and I always came across problems when I use a different version of julia with the package developed. Maybe you can create a conda environment yml file as gatk did so that we can install this package by creating a new conda environment and install the required dependencies automatically to ensure in the same environment as yours.
julia> import Pkg; Pkg.add(path="/data/xieduo/software/J-Space.jl")
Updating git-repo `/data/xieduo/software/J-Space.jl`
Updating registry at `~/.julia/registries/General.toml`
Resolving package versions...
ERROR: Unsatisfiable requirements detected for package GraphMakie [1ecd5474]:
GraphMakie [1ecd5474] log:
├─possible versions are: 0.1.0-0.4.1 or uninstalled
├─restricted to versions * by J_Space [fd1b0027], leaving only versions 0.1.0-0.4.1
│ └─J_Space [fd1b0027] log:
│ ├─possible versions are: 0.1.0 or uninstalled
│ └─J_Space [fd1b0027] is fixed to version 0.1.0
├─restricted by compatibility requirements with AbstractPlotting [537997a7] to versions: 0.2.0-0.4.1 or uninstalled, leaving only versions: 0.2.0-0.4.1
│ └─AbstractPlotting [537997a7] log:
│ ├─possible versions are: 0.9.0-0.18.3 or uninstalled
│ ├─restricted by compatibility requirements with PlotUtils [995b91a9] to versions: 0.9.0-0.10.6 or uninstalled
│ │ └─PlotUtils [995b91a9] log:
│ │ ├─possible versions are: 0.5.0-1.3.1 or uninstalled
│ │ ├─restricted by compatibility requirements with Plots [91a5bcdd] to versions: 0.5.0-1.3.1
│ │ │ └─Plots [91a5bcdd] log:
│ │ │ ├─possible versions are: 0.12.1-1.33.0 or uninstalled
│ │ │ ├─restricted to versions * by SubClonalSelection [f2909333], leaving only versions 0.12.1-1.33.0
│ │ │ │ └─SubClonalSelection [f2909333] log:
│ │ │ │ ├─possible versions are: 0.0.0 or uninstalled
│ │ │ │ └─SubClonalSelection [f2909333] is fixed to version 0.0.0
│ │ │ ├─restricted by compatibility requirements with StatsPlots [f3b207a7] to versions: 0.14.0-1.33.0
│ │ │ │ └─StatsPlots [f3b207a7] log:
│ │ │ │ ├─possible versions are: 0.10.0-0.15.3 or uninstalled
│ │ │ │ ├─restricted to versions * by CanEvolve [28e55d1b], leaving only versions 0.10.0-0.15.3
│ │ │ │ │ └─CanEvolve [28e55d1b] log:
│ │ │ │ │ ├─possible versions are: 0.1.0 or uninstalled
│ │ │ │ │ └─CanEvolve [28e55d1b] is fixed to version 0.1.0
│ │ │ │ └─restricted by compatibility requirements with Plots [91a5bcdd] to versions: 0.10.0-0.14.33 or uninstalled, leaving only versions: 0.10.0-0.14.33
│ │ │ │ └─Plots [91a5bcdd] log: see above
│ │ │ ├─restricted by compatibility requirements with RecipesBase [3cdcf5f2] to versions: 0.12.1-0.29.9 or uninstalled, leaving only versions: 0.14.0-0.29.9
│ │ │ │ └─RecipesBase [3cdcf5f2] log:
│ │ │ │ ├─possible versions are: 0.4.0-1.2.1 or uninstalled
│ │ │ │ ├─restricted by compatibility requirements with Plots [91a5bcdd] to versions: 0.4.0-1.2.1
│ │ │ │ │ └─Plots [91a5bcdd] log: see above
│ │ │ │ ├─restricted by compatibility requirements with StatsPlots [f3b207a7] to versions: 0.5.0-1.2.1
│ │ │ │ │ └─StatsPlots [f3b207a7] log: see above
│ │ │ │ └─restricted by compatibility requirements with CancerSeqSim [c7b3ebfe] to versions: 0.4.0-0.8.0, leaving only versions: 0.5.0-0.8.0
│ │ │ │ └─CancerSeqSim [c7b3ebfe] log:
│ │ │ │ ├─possible versions are: 0.2.0 or uninstalled
│ │ │ │ └─restricted to versions * by SubClonalSelection [f2909333], leaving only versions 0.2.0
│ │ │ │ └─SubClonalSelection [f2909333] log: see above
│ │ │ └─restricted by compatibility requirements with StaticArrays [90137ffa] to versions: 0.21.0-1.33.0 or uninstalled, leaving only versions: 0.21.0-0.29.9
│ │ │ └─StaticArrays [90137ffa] log:
│ │ │ ├─possible versions are: 0.8.0-1.5.7 or uninstalled
│ │ │ ├─restricted by compatibility requirements with PhyloNetworks [33ad39ac] to versions: 0.8.3-1.5.7
│ │ │ │ └─PhyloNetworks [33ad39ac] log:
│ │ │ │ ├─possible versions are: 0.9.0-0.15.2 or uninstalled
│ │ │ │ └─restricted to versions * by J_Space [fd1b0027], leaving only versions 0.9.0-0.15.2
│ │ │ │ └─J_Space [fd1b0027] log: see above
│ │ │ └─restricted by compatibility requirements with GeometryBasics [5c1252a2] to versions: 0.12.0-1.5.7
│ │ │ └─GeometryBasics [5c1252a2] log:
│ │ │ ├─possible versions are: 0.1.0-0.4.4 or uninstalled
│ │ │ └─restricted by compatibility requirements with NetworkLayout [46757867] to versions: 0.3.0-0.4.4
│ │ │ └─NetworkLayout [46757867] log:
│ │ │ ├─possible versions are: 0.2.0-0.4.4 or uninstalled
│ │ │ ├─restricted to versions * by J_Space [fd1b0027], leaving only versions 0.2.0-0.4.4
│ │ │ │ └─J_Space [fd1b0027] log: see above
│ │ │ └─restricted by compatibility requirements with GraphMakie [1ecd5474] to versions: 0.3.0-0.4.4
│ │ │ └─GraphMakie [1ecd5474] log: see above
│ │ └─restricted by compatibility requirements with Plots [91a5bcdd] to versions: 0.5.0-0.6.5
│ │ └─Plots [91a5bcdd] log: see above
│ └─restricted by compatibility requirements with GeometryBasics [5c1252a2] to versions: [0.9.0-0.9.27, 0.12.9-0.18.3] or uninstalled, leaving only versions: 0.9.0-0.9.27 or uninstalled
│ └─GeometryBasics [5c1252a2] log: see above
└─restricted by compatibility requirements with Makie [ee78f7c6] to versions: 0.1.0 or uninstalled — no versions left
└─Makie [ee78f7c6] log:
├─possible versions are: 0.9.0-0.17.13 or uninstalled
├─restricted by compatibility requirements with PlotUtils [995b91a9] to versions: 0.9.0-0.12.0 or uninstalled
│ └─PlotUtils [995b91a9] log: see above
└─restricted by compatibility requirements with AbstractPlotting [537997a7] to versions: [0.9.0-0.9.6, 0.13.0-0.17.13] or uninstalled, leaving only versions: 0.9.0-0.9.6 or uninstalled
└─AbstractPlotting [537997a7] log: see above
Stacktrace:
[1] propagate_constraints!(graph::Pkg.Resolve.Graph, sources::Set{Int64}; log_events::Bool)
@ Pkg.Resolve ~/software/julia-1.7.3/share/julia/stdlib/v1.7/Pkg/src/Resolve/graphtype.jl:1063
[2] propagate_constraints! (repeats 2 times)
@ ~/software/julia-1.7.3/share/julia/stdlib/v1.7/Pkg/src/Resolve/graphtype.jl:1000 [inlined]
[3] simplify_graph!(graph::Pkg.Resolve.Graph, sources::Set{Int64}; clean_graph::Bool)
@ Pkg.Resolve ~/software/julia-1.7.3/share/julia/stdlib/v1.7/Pkg/src/Resolve/graphtype.jl:1519
[4] simplify_graph! (repeats 2 times)
@ ~/software/julia-1.7.3/share/julia/stdlib/v1.7/Pkg/src/Resolve/graphtype.jl:1519 [inlined]
[5] resolve_versions!(env::Pkg.Types.EnvCache, registries::Vector{Pkg.Registry.RegistryInstance}, pkgs::Vector{Pkg.Types.PackageSpec}, julia_version::VersionNumber)
@ Pkg.Operations ~/software/julia-1.7.3/share/julia/stdlib/v1.7/Pkg/src/Operations.jl:335
[6] targeted_resolve(env::Pkg.Types.EnvCache, registries::Vector{Pkg.Registry.RegistryInstance}, pkgs::Vector{Pkg.Types.PackageSpec}, preserve::Pkg.Types.PreserveLevel, julia_version::VersionNumber)
@ Pkg.Operations ~/software/julia-1.7.3/share/julia/stdlib/v1.7/Pkg/src/Operations.jl:1154
[7] tiered_resolve(env::Pkg.Types.EnvCache, registries::Vector{Pkg.Registry.RegistryInstance}, pkgs::Vector{Pkg.Types.PackageSpec}, julia_version::VersionNumber)
@ Pkg.Operations ~/software/julia-1.7.3/share/julia/stdlib/v1.7/Pkg/src/Operations.jl:1139
[8] _resolve(io::Base.TTY, env::Pkg.Types.EnvCache, registries::Vector{Pkg.Registry.RegistryInstance}, pkgs::Vector{Pkg.Types.PackageSpec}, preserve::Pkg.Types.PreserveLevel, julia_version::VersionNumber)
@ Pkg.Operations ~/software/julia-1.7.3/share/julia/stdlib/v1.7/Pkg/src/Operations.jl:1160
[9] add(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}, new_git::Set{Base.UUID}; preserve::Pkg.Types.PreserveLevel, platform::Base.BinaryPlatforms.Platform)
@ Pkg.Operations ~/software/julia-1.7.3/share/julia/stdlib/v1.7/Pkg/src/Operations.jl:1176
[10] add(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; preserve::Pkg.Types.PreserveLevel, platform::Base.BinaryPlatforms.Platform, kwargs::Base.Pairs{Symbol, Base.TTY, Tuple{Symbol}, NamedTuple{(:io,), Tuple{Base.TTY}}})
@ Pkg.API ~/software/julia-1.7.3/share/julia/stdlib/v1.7/Pkg/src/API.jl:268
[11] add(pkgs::Vector{Pkg.Types.PackageSpec}; io::Base.TTY, kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Pkg.API ~/software/julia-1.7.3/share/julia/stdlib/v1.7/Pkg/src/API.jl:149
[12] add(pkgs::Vector{Pkg.Types.PackageSpec})
@ Pkg.API ~/software/julia-1.7.3/share/julia/stdlib/v1.7/Pkg/src/API.jl:144
[13] #add#26
@ ~/software/julia-1.7.3/share/julia/stdlib/v1.7/Pkg/src/API.jl:141 [inlined]
[14] add
@ ~/software/julia-1.7.3/share/julia/stdlib/v1.7/Pkg/src/API.jl:141 [inlined]
[15] add(; name::Nothing, uuid::Nothing, version::Nothing, url::Nothing, rev::Nothing, path::String, mode::Pkg.Types.PackageMode, subdir::Nothing, kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
@ Pkg.API ~/software/julia-1.7.3/share/julia/stdlib/v1.7/Pkg/src/API.jl:166
[16] top-level scope
@ REPL[2]:1Best, Duo
I posted the commands and logs below:
Do you have any suggestions?
Best, Duo