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BIMIB-DISCo / TRONCO

Repository of the TRanslational ONCOlogy library, which includes various algorithms (such as CAPRESE and CAPRI) and the Pipeline for Cancer Inference (PICNIC).
https://bimib-disco.github.io/TRONCO
GNU General Public License v3.0
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Functions association #10

Closed luca-dex closed 9 years ago

luca-dex commented 9 years ago

To do list for the TRONCO / Cytron magic program!

Check Function TRONCO name Description Notes
Import query TCGA Import data from TCGA @caravagn from the website?
Import query CBIO cbio.query Import data from CBIO
Import MAF maf simple lib
Import VCF vcf example
Import GISTIC import.gistic
Import TXT
Viz table
Viz oncoprint oncoprint rename -> tronco.print ?
Viz report show
Manual Selection events.selection samples, genes, events
Frequency Selection events.selection samples, genes, events
Name I/O Selection events.selection samples, genes, events
Rename rename.type rename.gene genes, types
Delete delete.type delete.gene type,genes
Add samples, events (bind)
Merge union.types -> merge.types type, samples, genes, events, type=1/type=2
Bind samples (sbind), events (ebind)
luca-dex commented 9 years ago

done!