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BIMIB-DISCo / TRONCO

Repository of the TRanslational ONCOlogy library, which includes various algorithms (such as CAPRESE and CAPRI) and the Pipeline for Cancer Inference (PICNIC).
https://bimib-disco.github.io/TRONCO
GNU General Public License v3.0
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Wikipathways #113

Closed luca-dex closed 5 years ago

luca-dex commented 5 years ago

This PR replace #112 after internal discussion

As proposed by @AlexanderPico this PR introduces WikiPathways as a suggested package for TRONCO. To show the usage of WikiPathways an example has been added to the vignette.

codecov-io commented 5 years ago

Codecov Report

Merging #113 into development will decrease coverage by 0.08%. The diff coverage is n/a.

Impacted file tree graph

@@               Coverage Diff               @@
##           development     #113      +/-   ##
===============================================
- Coverage        70.35%   70.27%   -0.09%     
===============================================
  Files               21       21              
  Lines             7768     7784      +16     
===============================================
+ Hits              5465     5470       +5     
- Misses            2303     2314      +11
Impacted Files Coverage Δ
R/visualization.R 36.14% <0%> (-0.27%) :arrow_down:
R/external.R 0% <0%> (ø) :arrow_up:
R/as.functions.R 94.27% <0%> (+0.03%) :arrow_up:

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