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BIMIB-DISCo / TRONCO

Repository of the TRanslational ONCOlogy library, which includes various algorithms (such as CAPRESE and CAPRI) and the Pipeline for Cancer Inference (PICNIC).
https://bimib-disco.github.io/TRONCO
GNU General Public License v3.0
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Showing an oncoplot in a side by side view #120

Closed beginner984 closed 4 years ago

beginner984 commented 4 years ago

Hi

Indeed, this is nt an issue with your software rather my query about the possibility of a sort of visualisation

Please, you imagine I have two groups of patients for which I want to look at mutations in a fixed set of genes

That would be great if one could show hits and type of mutation for each gene in each group in a way to be comparable like the below figure

Picture

If there any function in your software to make this possible? If not do you have any suggestion to achieve such an view?

Thanks in advance

caravagn commented 4 years ago

Hi, TRONCO does not have such a function. You can however obtained that plot easily with ggplot, see here for instance for instance (then use coord_flip and ylim to achieve your squared rotated layout.

Does this help?

caravagn commented 4 years ago

Btw, you can normalise the data if you want first. It would be the same plot.