Repository of the TRanslational ONCOlogy library, which includes various algorithms (such as CAPRESE and CAPRI) and the Pipeline for Cancer Inference (PICNIC).
foreach hypo
if atomic nodes to hypo
transpose hypo adj matrix
add prefix to logic nodes (like `UP_AND...`,...)
initial node <- which column sum == 0
merge graph on adj matrix and hypo t adj matrix
reconnet edges to initial node (from adj matrix search for atomic node to hypo)
pseudo presudo presudo code:
In hypotheses expansion:
In tronco plot: